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Genome-tools provides flexible tools and a simple API for genomic sequence processing on genomes published in the standard Genbank format. A CGI-based web interface is also available. Please cite: Lee, W., Chen S.L. BioTechniques 33:1334-1341 (Dec 20
MyVocabtionary allows you to create an online dictionary for free!
MyVocabtionary (formerly phpVocabtionary) is a free PHP/MySQL-based web software that allows you to create a free dictionary. With our vast number of modifications, you can also make your dictionary even better! Download is completely free. Usage is a piece of cake and you can customise almost everything through a user-friendly GUI. Creating an online dictionary has never been that easy!
SemaRule Navigator is an Integrated Suite of Open-Source and Free-License Software, placing Semantic and Text Analysis Technologies in the toolbox of Researchers, Students, and Enterprises.
A realtime HL7 stream based clinical decision support system
HIStream is a clinical decision support system designed to operate on data streams. Rules can be specified using (fuzzy) logic formulas with temporal extensions (e.g. creatinine level high at least 3 days after surgery). All incoming clinical data can be stored in an integrated data warehouse (using postgresql). Additionally, incoming data can be forwarded to the clinical data warehouse project i2b2.
THIS PROJECT IS CURRENTLY IN DEVELOPMENT. FIRST BETA RELEASE WILL BE PUBLISHED JUNE 2015.
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Screensaver is a Lab Information Management System (LIMS) for high-throughput screening of small molecule and RNAi biological assays. It is a Java/JSF/Hibernate/Spring web application that is actively being developed and used at Harvard Medical School.
Note: The Screensaver project has moved to GitHub at https://github.com/hmsiccbl/screensaver.
A web based application to track protein related reagents including DNA constructs, cell lines, supes, and purified proteins. Supports creating, tracking, and prioritizing requests for transfections and DNA. Includes search and PDF reports.
Open source web tool to help you in the data visualisation
SVGMap is an open source web tool to help you in the visualisation of experimental data associated to some graphical representation.
More at :
1. Project website
http://bg.upf.edu/svgmap
2. Reference :
Xavier Rafael-Palou, Michael P. Schroeder, and Nuria Lopez-Bigas
SVGMap: configurable image browser for experimental data
Bioinformatics 2011 : btr581v1-btr581.
ToxOtis is a Java interface to the predictive toxicology services of OpenTox. ToxOtis is being developed to help both those who need a painless way to consume OpenTox web services and for ambitious service providers...
Unlimited organizations, 3 enterprise SSO connections, role-based access control, and pro MFA included. Dev and prod tenants out of the box.
Auth0's B2B Essentials plan gives you everything you need to ship secure multi-tenant apps. Unlimited orgs, enterprise SSO, RBAC, audit log streaming, and higher auth and API limits included. Add on M2M tokens, enterprise MFA, or additional SSO connections as you scale.
A system to perform analysis of large documents for the purpose of cataloging similar documents. Similarity is based upon contextual analysis of these documents done by identifying common words and proper nouns.
OWSLib is a Python package for client programming with Open Geospatial Consortium (OGC) web service (hence OWS) interface standards, and their related content models.
MySHI (My Self Health Information) is a database for tracking personal health information. The current focus is on nutritional information but other important data items will follow. Documentation is available under "Hosted Apps"/"MediaWiki"
The Generic Genetic Studies Database (GGSD) is a web-based, relational database driven data management software package for the management of large scale genetic studies.
A declarative logic programming system with first-class relations
embedded in a pure functional subset of Scheme. The system has true
unions, fair scheduling, lexically-scoped logical variables,
set-theoretical semantics, high performance without cuts
Web interface for python math modules. Developed with web2py. It uses pure python modules for easy deployment . Math2py requires the mpmath library installed with web2py. Download and unzip mpmath in web2py/site-packages
As an NIAID Bioinformatics Resource Center (BRC) Pathema contains in depth curatorial analysis of six target organisms from the list of NIAID category A-C pathogens. Pathema also offers single-genome and comparative multi-genome analyses as well as displ
Project aim to provide simple easy APIs for Java developers to use interactive abilities in their Java Applications like speech recognition, handwriting recognition, use of web cam , sound record/play, decision trees , text to speech and many others.
SyMBA is a Data Archive and Integrator that is based on the Functional Genomics Object Model (http://fuge.sf.net) and which archives, stores, and retrieves raw high-throughput data. See http://symba.sf.net and http://www.cisban.ac.uk
Synthetic Biology Software Suite (SynBioSS) is composed of a wiki for biochemical kinetic constants, a graphical interface for simulating synthetic biological pathways, and a simulator that runs on either a desktop or supercomputer.
Context-awareness is a key concept in ubiquitous computing. The Java Context-Awareness Framework (JCAF) is a Java-based context-awareness infrastructure and programmingAPI for creating context-aware applications.
Complete manufacturing automation platform for factory and process equipment. It includes multi-protocol communications (including Modbus/TCP), PLC soft logic, HMI, and tools for troubleshooting and installation in 4 comprehensive packages.
Simple interactive Java browser is basic simple browser show how we can use voice commands to navigate in web sites and use hyperlinks as a voice commands.
OpenAstrology is Java based Object-orientated implementation of Astrology. OpenAstrology will provide a platfrom to plug-in in the knowledge of Astrology and the derived solution will be the best real time Astrology solution