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JAligner is an open source Java implementation of the dynamic programming algorithm Smith-Waterman with Gotoh's improvement for biological local pairwise sequence alignment with the affine gap penalty model.
IslandEv distributes a Genetic Algorithm (like <a href="/projects/jaga">JaGa</a>) across a network (see <a href="/projects/distrit">DistrIT</a>) using an island based coevolutionary model in which neighbouring islands swap migrating individuals every
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SimAlgPro - it is a tool to simulate the main algorithms for processor planning. to contribute to the learning process. It allows visualize of interactive form the algorithm application and results.
Simulated annealing package written in Java using simplex downhill algorithm from Numerical Recipies in C++/FORTRAN/C
It is intended for use "behind the scenes" in applications, and it is optimised for ease of integration.
Completely standalone,
A fast, simple method of establishing musical genre of arbitrary compressed audio files calculated by comparisons with training sets. Program currently consists of a java console program. GUI front end, algorithm upgrades to come.
This project comprises a collection of libraries and applications for the field of program analysis. The starting point is a type analysis for Java programs using Agesen's Cartesian Product Algorithm.
MAGMA: Multiobjective Analyzer for Genetic Marker Acquisition
A genetic algorithm for generating SNP tiling paths from a large SNP database
based on the competing objectives of cost (number of SNPs) and coverage (haplotype blocks):
Hubley R., Zitzler
Java port and extension of MLC++ 2.0 by Kohavi et al. Currently contains ID3, C4.5, Naive (aka Simple) Bayes, and FSS and CHC (genetic algorithm) wrappers for feature selection. WEKA 3 interfaces are in development.
A collection of implementations of the Lovins stemmer as described in "Development of a Stemming Algorithm" by Julie Beth Lovins (published in "Mechanical translation and computational linguistics", 11:22-31, 1968).
Java Chaotic Random Number Generator - Inspired by chaos theory, the intent of this generator is to produce unseeded, unpredictable numbers. The numbers will not follow a predictable sequence and will not rely on a pseudorandom algorithm.
aVolve is an evolutionary/genetic algorithm designed to evolve single-cell organisms in a micro ecosystem. It currently uses the JGAP Genetic algorithm, but does include a primitive genetic algorithm written in Python.
A java command-line application where the main goal is to solve any simplex problem. It's a team-work school project. It can be usefull for other students who needs to understand the simplex algorithm.
GAZES - Genetic Algorithm Zombie Eradication Simulation Grid-based simulator for zombie scenario. The units will use genetic algorithm to determine their actions on a cycle by cycle basis. This is a school project, so is likely on hiatus for summer.
DEAL (Domain Extraction ALgorithm) is an application for domain analysis. Its main purpose is to extract domain information from existing Java applications and to create different kinds of models from the extracted data, including domain-specific languages.