Showing 3935 open source projects for "java projects on linux"

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  • 1
    PFAAT is a Java-based multiple sequence alignment editor and viewer designed for protein family analysis. You can download PFAAT from http://pfaat.sourceforge.net/
    Downloads: 4 This Week
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  • 2
    The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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    Downloads: 31 This Week
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  • 3
    GATE
    NOTE THAT THE SOURCE CODE AND ISSUE TRACKER HAVE NOW MOVED TO GITHUB. FIND US AT https://github.com/GateNLP/ GATE (General Architecture for Text Engineering) is an architecture, framework and development environment for developing, evaluating and embedding Human Language Technology. See http://gate.ac.uk for full details.
    Downloads: 5 This Week
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  • 4
    DODDLE-OWL

    DODDLE-OWL

    a Domain Ontology rapiD DeveLopment Environment – OWL extension

    DODDLE-OWL is a domain ontology development tool for the Semantic Web. DODDLE-OWL makes reuse of existing ontologies and supports the semi-automatic construction of taxonomic and other relationships in domain ontologies from documents.
    Downloads: 3 This Week
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  • 5
    UnBBayes

    UnBBayes

    Framework & GUI for Bayes Nets and other probabilistic models.

    UnBBayes is a probabilistic network framework written in Java. It has both a GUI and an API with inference, sampling, learning and evaluation. It supports Bayesian networks, influence diagrams, MSBN, OOBN, HBN, MEBN/PR-OWL, PRM, structure, parameter and incremental learning. Please, visit our wiki (https://sourceforge.net/p/unbbayes/wiki/Home/) for more information. Check out the license section (https://sourceforge.net/p/unbbayes/wiki/License/) for our licensing policy.
    Downloads: 10 This Week
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  • 6
    java symbolic computing library and math editor, with : polynomial system solving, vectors & matrices, factorization, derivatives, integrals (rational functions), boolean algebra, simplification, MathML output, java code generation, geometric algebra
    Downloads: 2 This Week
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  • 7
    gVirtualXRay

    gVirtualXRay

    Virtual X-Ray Imaging Library on GPU

    gVirtualXRay is a C++ library to simulate X-ray imaging. It is based on the Beer-Lambert law to compute the absorption of light (i.e. photons) by 3D objects (here polygon meshes). It is implemented on the graphics processing unit (GPU) using the OpenGL Shading Language (GLSL). SimpleGVXR is a smaller library build on the top of gVirtualXRay. It provides wrappers to Python, R, Ruby, Tcl, C#, Java, and GNU Octave.
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    Downloads: 13 This Week
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  • 8
    CERCA

    CERCA

    CERCA – Citation Extraction & Reference Checking Assistant

    CERCA is an open-source research tool that supports the verification of bibliographic references in scientific manuscripts. It extracts references from PDF files and checks their existence and consistency against authoritative metadata sources, producing explainable diagnostics, audit logs, and reproducible reports. It is intended for: - Researchers performing final manuscript checks - Reviewers assessing reference consistency - Editors supporting editorial quality control -...
    Downloads: 15 This Week
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  • 9
    CVSim

    CVSim

    Cyclic Voltammetry Simulation Program for Research and Education

    This a cyclic voltammetry (CV) program created for teaching CV undergraduate chemistry students. For research, download the version from https://sourceforge.net/projects/cvsimplus/ . CVSim uses the implicit method to simulate diffusion. Development of new methods for more accurate simulation of the diffusion is under way. For more details and discussion contact me at akeramid@ucy.ac.cy.
    Downloads: 2 This Week
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  • 10
    BRL-CAD

    BRL-CAD

    Open Source Solid Modeling CAD

    BRL-CAD is a powerful cross-platform constructive solid geometry solid modeling system that includes an interactive geometry editor, ray-tracing for rendering & geometric analyses, network distributed framebuffer support, image & signal-processing tools.
    Downloads: 39 This Week
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  • 11
    Mars Simulation Project
    The Mars Simulation Project is an open source Java project to create a simulation of future human settlement on the planet Mars. See https://github.com/mars-sim/mars-sim for the LATEST issues/wiki/code change
    Downloads: 2 This Week
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  • 12
    stkpp

    stkpp

    C++ Statistical ToolKit

    STK++ (http://www.stkpp.org) is a versatile, fast, reliable and elegant collection of C++ classes for statistics, clustering, linear algebra, arrays (with an Eigen-like API), regression, dimension reduction, etc. Some functionalities provided by the library are available in the R environment as R functions (http://cran.at.r-project.org/web/packages/rtkore/index.html). At a convenience, we propose the source packages on sourceforge. The library offers a dense set of (mostly) template...
    Downloads: 0 This Week
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  • 13
    RPNCalc

    RPNCalc

    RPNCalc - The command line Reverse Polish Notation (RPN) Calculator

    RPNCalc is the command-line based Reverse Polish Notation (RPN) calculator. RPN calculators make it very simple to do complex calculations, especially if there are parentheses involved. I've created a User Guide (https://frossm.github.io/RPNCalc-UserGuide) to do a better job of explaining how to use RPNCalc than the old readme.md file, which was getting really long. If you have questions, issues, feedback, or ideas, please let me know. You can contact me via the links in the...
    Downloads: 9 This Week
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  • 14
    Open Beam Profiler

    Open Beam Profiler

    Profiling and analysis of laser beams with ImageJ

    This open-source software enables profiling and analysis of laser beams. It can be used with a variety of cameras supported by ImageJ and Micro-Manager, or images from any other source. It provides all common analysis methods like D4Sigma, knife-edge, as well as fitting of Hermite-Gauss, Laguerre-Gauss and super-Gauss functions.
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    Downloads: 9 This Week
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  • 15
    TomoJ

    TomoJ

    ImageJ plugin to perform Electron Tomography

    TomoJ is an ImageJ plug-in for tomographic reconstruction. It was designed for electron tomography, however any acquisition with parallel beam should work. TomoJ proposes the preprocessing and the registration of tilt-series prior to 3D reconstructions (WBP, ART, SIRT, OS-SART, compressed sensing). TomoJ is written in Java, the computations are multithreaded and reconstruction can be performed on CPU or GPU (OpenCL). registration is described in: Journal of Structural Biology: X....
    Downloads: 7 This Week
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  • 16
    CleverPsych  Practice Management

    CleverPsych Practice Management

    FREE software to manage your psychology or allied health solo practice

    CleverPsych is FREE software for psychologists and other allied health professionals who run their own practices. We have been using CleverPsych in our own practice in Australia since 2007. The system enables you to record your clients, appointments, services, organisations and referring doctors. The aim is to make operations like generating standard letters, claiming from the government and insurance companies, and reporting income, much easier. LOOK in the Files tab for...
    Downloads: 8 This Week
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  • 17
    NGSEP

    NGSEP

    NGSEP (Next Generation Sequencing Experience Platform)

    NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. The current version provides functionalities for both de-novo and reference guided analysis of sequencing data, including genome assembly, read mapping, variants detection and genotyping and de-novo analysis of data generated from reduced representation protocols. NGSEP also provides modules for analysis of genomic variation databases (VCF files), including functional annotation, filtering,...
    Downloads: 9 This Week
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  • 18
    open_data_assimilation
    Generic data-assimilation toolbox written in java, with native (c and fortran) libraries for high performance computing. Provides tools to couple to your own model and a wide range of algorithms, ranging from parameter calibration to Kalman filters.
    Downloads: 1 This Week
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  • 19
    loto
    http://loto.sourceforge.net/ hosts 4 projects of free software related to materials science and physics. They are loto, feram, compasses and xtalgrowth.
    Downloads: 3 This Week
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  • 20
    Statistics101 - Resampling Statistics

    Statistics101 - Resampling Statistics

    Use simulation to perform statistical analyses.

    Statistics101 is an Integrated Development Environment (IDE) that uses a simple, powerful language called “Resampling Stats” to develop Monte Carlo programs to analyze and solve statistical problems. The original Resampling Stats language and computer program were developed by Dr. Julian Simon (https://www.juliansimon.com/) and Peter Bruce (https://www.scientificamerican.com/author/peter-bruce/) as a new way to teach Statistics to social science students. Of course, social science students...
    Downloads: 14 This Week
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  • 21
    Ket

    Ket

    An algebra editor

    A text editor for maths. Simple algebra should be faster and more intuitive to perform on a computer than on paper and should look like maths. Write small fragments in plain text; perform simple click-and-drag algebra with the mouse; and explore more involved algebra through keyboard shortcuts. When done, save as plain text files or export to LaTeX and HTML.
    Downloads: 2 This Week
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  • 22
    DICOM# open source project is intented to provide an OO class library for DICOM communication and will be developed purely by C# and running in .NET environment. DICOM# partially rewrites dcm4che open source project in C#. This subproject contains the GIT repo for the orignal dicom-cs project: https://sourceforge.net/projects/dicom-cs/.
    Downloads: 0 This Week
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  • 23
    Autoplot

    Autoplot

    Autoplot is an interactive browser for data on the web

    Autoplot is an interactive browser for data on the web. Give Autoplot a URL or local file name and it creates a sensible plot of the data. Autoplot allows you to interactively browse data stored in ascii, .cdf, netcdf, and many other formats. Autoplot's source has been moved to GitHub. Thanks to SourceForge for many years of hosting!
    Downloads: 4 This Week
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  • 24
    OpenAvionics
    OpenAvionics is a hardware/software projet to design low cost instrumentation (air/attitude, navigation, voice, engine) for light and ultra light aircrafts. The display part of the project may be used in aircraft simulation projects.
    Downloads: 0 This Week
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  • 25
    Interlocking system for modular model railroading. The goal is the development of hard- and software for an model interlocking interfacing on the one hand to the model railroad and on the other to the model of the userinterface of an real interlocking.
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    Downloads: 1 This Week
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