Search Results for "open source assembly software source code" - Page 46
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Showing 3104 open source projects for "open source assembly software source code"
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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This package contains code for use with Short Read DNA Sequencing technologies, and includes packages for ChIP-Seq, Whole Transcriptome Shotgun Sequencing, Whole Genome Shotgun Sequencing, SNP Detection, Transcript expression and file conversion.
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Implementation in Python of some of the statistical methods provided by "asurv", the survival analysis software.
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minydro
A simple hydrodynamic code less than 700 lines long!
A short and simple hydrodynamic Godunov code using a cell-based structure. This program is free to use. It was designed mainly for teaching purposes and it is made freely available in the hope that someone may find it useful. -
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JPIE is an implementation of an Open Source Java to Prolog/Prolog to Java interoperability mecanism based on the Java VM.
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bioluminescence
A java library for polymorphic genome assembly.
Bioluminescence is a java library for facilitating de novo genome assembly in the context of reads sampled from a single highly-polymorphic diploid individual. Bioluminescence implements a novel algorithm which uses an artificial neural network to classify contigs in a genome assembly as haplotype-specific or not-haplotype-specific. It then uses this information to partition the original input read set into two subsets, each of which has been enriched for one of the haplotypes. Initial... -
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SnowGuestimator
Simulation to estimate snow heights
SnowGuestimator is a simulation software to estimate snow heights. According to weather data It calculates how much snow may potentially fall naturally, how much could propably be produced artificially and how many days of skiing would be possible. -
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A small and optimized C library for the ASURO platform. A small ASURO-compatible bootloader is also included. ##### Eine optimierte kleine C-Bibliothek für die ASURO-Plattform. Zum Umfang gehört außerdem ein ASURO-kompatibler Bootloader.
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Sphinx SD Tools
Common accessible environment for system dynamics simulation.
The Sphinx project is dedicated to create common accessible environment for system dynamics simulation. This software is developed on Java 6 platform and use Java Swing GUI. -
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Algeo#
A class library to use conformal geometric algebra in C#
The project is in a very early state and the working parts aren't well tested! Currently it's possible to do basic calculations with multivectors. A lot of operators are overloaded so that you can write your calculations in C# source code almost like you would do in a math software. There is also an extension library providing a control which can visualize multivectors. Visualization is based on OpenGL through the OpenTK library. At the moment I'm working on improvements of the functionality of this library. -
Build Agents and Models on One PlatformGemini Enterprise Agent Platform is Google Cloud's comprehensive platform for developers to build, scale, govern, and optimize agents and models. Choose from Google's most advanced models and third-party models like Anthropic's Claude Model Family.
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Hilbert II - QEDEQ
proof verifier for mathematical proofs and documentation generator
In the tradition of Hilbert's program we create a formal correct (checkable by a proof verifier) but readable (like an ordinary LaTeX textbook) mathematical knowledge base which is freely accessible within the internet. Logic and set theory started. -
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NanocalcFX
Open Source Data Evaluation Software
NanocalcFX is a free and open source evaluation software for a simple yet comfortable solution to deal with thousands of transport kinetics measured with a fluorescence microscope or similar kinetics. Data can be imported from CSV or Excel files or using the dedicated image stack analyser (NISA). You can get sample data at the nanocalcFX homepage. Note that nanocalcFX is currently in a beta state. -
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ktree
clustering, machine learning, algorithms
This project has moved to github at http://lmwtree.devries.ninja. -
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TopiaryExplorer has moved to GitHub. Find the new project info page here: https://github.com/qiime/Topiary-Explorer. If you need help or would like to add a bug/feature request, please do so there.
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Opal is a toolkit for wrapping scientific applications as Web services on Cluster, Grid and Cloud resources with ease. Users may access these software as a service using simple Web service APIs from their custom application and workflow environment.
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SPE Toolbox
MatLab functions for reading WinView/WinSpec .spe files
This toolbox is a collection of MatLab functions for reading WinView/WinSpec files (.spe extension) directly to MatLab. It provides functions for reading full header from file into a structure, reading frames into matrices, and reading pixel values across all frames. You can use these functions to analyse and process experiment data stored in .spe files in MatLab, and to write functions to export .spe files to animated GIFs for use in presentations. Also includes simple MatLab application... -
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jk3d is a java code for 3d interpolation of scattered data. jk3d uses a quality weighted ordinary Kriging method and optional an inverse distances weighting method. It has no graphical user interface and uses ASCII files to define the input.
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Discrete Dipole Aproximation Project
Plugin orientated Discrete Dipole Approximation (DDA) Solver
Discrete Dipole Approximation Project, is a software package designed to solve the Discrete Dipole Problem by the Discrete Dipole Approximation (DDA) method. This software is desgined to be plugin operated allowing for easy implimincation of new solver methods to improve the efficienty of the code. The plugin support also allow the program to write its output in multiple formats and structures defined by plugins. -
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A software for automatic peak selection and scoring of AFLP data tables witten by Wolfgang Arthofer, University of Innsbruck. Austria.
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OOBD supports a self-programable Tool for Vehicle Onboard Diagnostics (OBD) for various platforms like the Windows-Desktop, mobile Phones and Smartphones Please note that we are actual moving this project over to oobd.googlecode.com. The software source code repository is already moved, other areas will follow.
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Route11
C++ flow-based metaprogramming library
Route11 is a powerful C++ flow-based metaprogramming library that allows you to create and route complex dataflow systems at compile-time. Route11 uses Template Metaprogramming to construct complex "process systems" defined by static relationships between "process primitives". A process primitive is a generic host class that inherits a "process policy". The process policy defines the specific behavior of a process primitive. The general term: "process" can refer to either one of these... -
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FluxModules
Module Computation for Metabolic Networks
Genome Scale Metabolic Networks are complex systems, Modules help to break them down and hence ease understanding and algorithmic complexity. FluxModules is a toolbox with code for module detection and module visualization. -
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VOpR
VOpR - a virtual optical rail
VOpR - A Virtual Optical Rail VOpR allows to create and evaluate simple optical systems, in which the basic optical elements are arranged along the optical axis. The current supported optical elements are: spaces,spherical lenses, circular apertures and flat blocks of some optical medium. The program has three main components: 1. The database editor. Currently the database can store data about: -optical materials, -spherical lenses, -projection properties of light sensors and... -
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We aim to develop a transformative computational method for automatic discovery of a set of dynamical rules that best captures both state transition and topological transformation in the data of spatio-temporal evolution of a complex network.
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Quantum Chemistry Import Tool is a django application that parses the output file of quantum chemistry software as NWChem, Octopus, Gaussian, etc. The result can be saved in relational database.