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A simple Java application for the analysis and identification of gene networks. ProPesca takes as input shorts temporal series of realtime-PCR expression levels and it clusters genes that exhibit either similar or specular behaviors.
Similarity Evaluator is a tool to analyse similarity function implementations and algorithms, where is possible to compare several APIs on performance, best result, similarity and discernability values.
NetAtlas is a Cytoscape plugin that uses tissue gene expression data to filter cellular signaling network. The plugin identifies of tissue-defined networks, tissue-specific network components, and components with correlated expression across tissues.
Currently, this project consists of a pure java math expression parser optimized for repeated evaluation. Development of an interactive 3D math visualization application based on this parser is planned for the future.
CurveDraw is a software that aim to draw 2D curves (Cartesian,polaire).
The software is 100% Java.CurveDraw is based on JEP library (Java Math Expression Parser) .
REctangular (BEta) Cylindrical Coordinates App 2.0: "RebeCCa2" The problem, which we're interested in: How does the 'potential lines' look for the Laplace operator in a non-spherical geometry? -Can we possibly fit with an analytical expression in 2D
JFEP is a Java fast mathematical expression parser and evaluator. It is designed to avoid inefficiency and to support multiple evaluations without overhead.
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Open2Dprot is an open-source proteomics project for the development of bioinformatic tools for n-dimensional protein expression data analysis of quantified protein expression across multiple samples from research experiments.
XMLMath evaluates mathematical, logical or textual expressions described in xml and prints the result. For example, to compute the result of 1 + 1, you would write: <add> <long value="1"/> <long value="1"/> </add>
Expression4J (Math Expression Parser) is a java framework used to manage mathematic expression stored in String object like "f(x,b)=2*x-cos(b)" or "g(x,y)=f(y,x)*-2". Expression gramar can be define by user (add new operator or type ...)
MobileMath is a software written by using J2ME technolology. It turns mobile into calculator supporting many operations such as : evaluate expression, plotting, differentiate & integrate expression... It can run on any mobiles supporting Java.
Parser for mathematical expressions written in Java. Expressions may contain variables, functions and constants. The parser turns a string argument into an expression tree, which then can be evaluated.
This program allows you to specify a Deterministic Finite Automata, Nondeterministic Finite Automata, or Generalized NFA and will return a regular expression which recognizes the same language as the FA you described.
Maple Tree is a Java based visualization tool used by researchers in the biological sciences to visualize and graphically browse the results of analyses of gene expression data collected from microarray experiments.
JEPLite is a light-weighted (re)implementation of the JavaExpression Parser (jep.sourceforge.net). The intention is to strip some of its not-so-often-used features, and thus speeding the rest. Includes expression optimizer.
Impression is the flexible and extensible parser of mathematical expressions written in Java. It supports user defined
operators, single or multi parameter functions and unlimited number
of parameters. It is designed to use with numerical methods.
JMAT : Java MATrix tools package.
Provides an easy-to-use class of matrix with MATLAB-like functions and syntax. JMAT also includes plots and histograms in 2D or 3D, an expression parser, and some statistic simulation tools.
Java Calculator Suite (jcs) is a collection of Java classes related to expression calculators written in Java. Suports booleans, large numbers, machine numbers, most operators and about 25 different functions.
JFD is an educational Java tool for computing the formal derivative of an expression. It recognizes the regular operators, parentheses and functions. It can also be extended with custom functions and/or operators.