Search Results for "umbrella-cli"
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Showing 50 open source projects for "umbrella-cli"
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arduino-cli
Arduino command line tool
...The script requires sh, which is always available on Linux and macOS. sh is not available by default on Windows, though it is available as part of Git for Windows (Git Bash). If you don't have sh available, use the "Download" installation option. If you would like to use the arduino-cli command from any location, install Arduino CLI to a directory already in your PATH or add the Arduino CLI installation path to your PATH environment variable. -
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PDFMathTranslate
PDF scientific paper translation with preserved formats
PDFMathTranslate is a Python-based tool that uses AI translation to convert academic PDFs into bilingual (e.g. Chinese-English) documents while preserving formatting, including math notation. It supports OCR-enhanced content and offers CLI, GUI, Docker, and Zotero integration under AGPL v3. -
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Th3inspector
Best Tool For Information Gathering
Th3Inspector is a Perl- and shell-based, all-in-one information-gathering toolkit built to quickly enumerate public and semi-public data about targets (domains, IPs, phone numbers, mail servers, etc.). It exposes a single command-line entrypoint (Th3inspector.pl) with many switches for common reconnaissance tasks — examples include website info, whois, MX lookup, geo-IP, subdomain discovery, CMS detection, port scanning, and Cloudflare real-IP resolution — so a user can chain many checks... -
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City Map Poster Generator
Transform your favorite cities into beautiful, minimalist designs
maptoposter is a code-driven poster generator that turns any city into a minimalist, print-style map artwork with consistent typography and themed color palettes. It is built around a simple command-line flow where you pass a city and country, and the tool fetches the relevant map geometry and renders it into a clean composition that looks like a design product rather than a raw GIS export. The repository includes a library of predefined themes that change the overall look (for example,... -
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Cookiecutter Data Science
Project structure for doing and sharing data science work
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. When we think about data analysis, we often think just about the resulting reports, insights, or visualizations. While these end products are generally the main event, it's easy to focus on making the products look nice and ignore the quality of the code that generates them. Because these end products are created programmatically, code quality is still important! And we're not talking... -
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miRge3
Comprehensive analysis of small RNA sequencing data
An update to Python package to perform comprehensive analysis of small RNA sequencing data, including miRNA annotation, A-to-I editing, novel miRNA detection, isomiR analysis, visualization through IGV, processing Unique Molecular Identifieres (UMI), tRF detection and producing interactive graphical output. miRge3.0 is developed in python v3.8 and is a recent update of our previous version miRge2.0. This build includes command line interface (CLI) and cross-platform Graphical User Interface (GUI). For more details refer to documentation link below. -
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proex gpr control
Mala ProEx and Easy Locator GPR control software
Reverse engineered communication protocol for the Mala ProEx and Easy Locator GPR implemented as a CLI & GUI running on unix systems. The communication protocol was ported to a graphical user interface applicable to embedded systems through the use of the Qt toolkit (tested on Armadeus Systems APF27 board). The GUI includes GPS datalogging capability assuming a receiver providing NMEA sentences at 4800 bauds is connected to the host computer. -
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Hydrogen Bond Analysis Tool (HBAT)
HBAT 2 is migrated from PERL to Python.
HBAT(Hydrogen Bond Analysis Tool) is a tool to automate the analysis of hydrogen bonds present in a PDB Structure file. HBAT 2 is migrated from PERL to Python. Latest Documentation: https://hbat.abhishek-tiwari.com/ Web Server Version: http://hbat-web.abhishek-tiwari.com Latest Github Release: http://github.com/abhishektiwari/hbat Citation: Tiwari, A., & Panigrahi, S. K. (2007). HBAT: A Complete Package for Analysing Strong and Weak Hydrogen Bonds in Macromolecular Crystal... -
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Translate Shell
Command-line translator using Google Translate, Bing Translator, etc.
Translate Shell (formerly Google Translate CLI) is a command-line translator powered by Google Translate (default), Bing Translator, Yandex.Translate, and Apertium. It gives you easy access to one of these translation engines in your terminal. By default, translations with detailed explanations are shown. You can also translate the text briefly (only the most relevant translation will be shown). -
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CloudMapper
CloudMapper analyzes your Amazon Web Services (AWS) environments
...If you want to add your own private commands, you can create a private_commands directory and add them there. You must have AWS credentials configured that can be used by the CLI with reading permissions for the different metadata to collect. Cloudmapper needs to make IAM calls and cannot use session credentials for collection, so you cannot use the AWS-vault server if you want to collect data, and must pass role credentials indirectly or configure AWS credentials manually inside the container. Generate HTML report. ... -
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slimfastq
An efficient lossless compression for fastq files.
slimfastq is a cli application that compresses/decompresses fastq files. It features: * High compression ratio * Relatively low cpu/memory usage * Truly lossless compression/decompression -
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JDataCom
Stream manager
Create ports : TCP/UDP/Terminal/File/RS232(txrx)/DB/System/Bluetooth/JNA/ETH(jpcap)/Sound. Simply configure with GUI/SFC XML file/CLI. Display, modify, replay, store (tcpdump), decode flow of bytes or objects. Implement : loop/echo/paddings/... and delai/DB2XML/Stacks/Matrix/... management. Stream conversations with a dynamic packet analyse. -
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obo An umbrella organization for ontologies and structured shared controlled vocabularies for use across all biological and biomedical domains
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CBMPy
PySCeS Constraint Based Modelling
PySCeS CBMPy is a new platform for constraint based modelling and analysis. It has been designed using principles developed in the PySCeS simulation software project: usability, flexibility and accessibility. CBMPy supports the latest standards for encoding CBM models encoding, SBML L3 FBC, COBRA as well as MIRIAM compliant RDF and custom annotations. Its architecture is both extensible and flexible using data structures that are intuitive to the biologist while transparently... -
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codelyzer
Static analysis for Angular projects
A set of tslint rules for static code analysis of Angular TypeScript projects. (If you are using ESLint check out the new angular-eslint repository.). You can run the static code analyzer over web apps, NativeScript, Ionic, etc. Note that by default all components are aligned with the style guide so you won't see any errors in the console. Codelyzer supports any template and style language by custom hooks. If you're using Sass for instance, you can allow codelyzer to analyze your styles by... -
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PF_HP
Prediction of proteinfolding in 2D HP model
Even in the simplified two dimensional HP-model (hydrophob/polar) the prediction of proteinfolding is NP complete. We implement a brute force algorithm with serial and parallel execution to solve short inputs of HP sequences (0-1 bitstrings). Selbst im vereinfachten zweidimensionalen HP-Modell (hydrophob/polar) ist die Proteinfaltung bereits NP-vollständig. Hier implementieren wir einen brute-force Algorithmus zur Lösung kurzer Eingabesequenzen (0-1-Bitstrings) für die... -
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UMLS::Query is an umbrella for projects that create measures of semantic similarity for the biomedical domain. Our current project is UMLS-Interface and UMLS-Similarity. Our JBI-2007 article was based on Semantic-Similarity and Snomed-Interface.
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Command line FFT
A simple command line utility to produce an FFT/IFFT of ASCII data
Ever had a bunch of ASCII data that you would like to have a quick look at in frequency domain, but don't want to fire up some bulky analysis software package just for that? Well, I have... So I wrote this tiny tool. It is based on fftw (www.fftw.org) and boost's program options (boost.org). cli-fft is really simple: All it does is to receive ASCII data from a file or standard in, FFT it and write out the result into a file or to standard out. -
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...The project also includes CYMRIE an adapted version for Welsh of the GATE - ANNIE Named Entity Recognition (NER) application for a range of entities such as Persons, Organisations, Locations, and date and time expressions. Version 2.x The CYMRIE pipeline is accessible via a API, standalone GUI and CLI. The CymrIE pipeline has also been adapted for Twitter.
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NICOS
Client/Server based experiment and instrument control system
Client/Server based experiment and instrument control system -
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KAnalyze
DNA/RNA Sequence K-mer Toolkit
KAnalyze is a Java toolkit designed to convert DNA and RNA sequences into k-mers. It is both a command line application and an API. -
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Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms.
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COFILOS
A Development Framework for Coldfire
Contains a framework for Coldfire MCUs like 52254. The framework supports a Command Line Interface (CLI) that may work from Serial port, USB or ENET. The framework uses Processor Expert and IDE requirement is MCU Eclipse 10.4 from Freescale. Includes the FunkOS Realtime Operating System by Funkenstein Software Consulting, available at http://funkos.sourceforge.net Mainly it is a support package for the development board Perseus, but I have ported also the RTOS to MCF52233DEMO board. ... -
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BTA_lib
Simple CLI client for 6-meter telescope BTA
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Protein Contact Matrix Generator
Command line application to generate contact matrix from proteins (3D)
A protein contact matrix is 2D representation of the distances between amino acid residues in a 3D protein structure. Protein Contact Map Generator (PCMGen) is a command line tool which takes protein 3D structures (PDB format files) as input and computes contact distances between two chains (from single or two different proteins). These matrix files can be further visualised as Contact Maps using other visualization tools/ programs (like R-heatmaps). Contact Maps can be used to understand...
