Search Results for "flat file databases"
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Showing 285 open source projects for "flat file databases"
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Prokka
Rapid prokaryotic genome annotation
Prokka is a command-line software tool for rapid annotation of prokaryotic genomes (bacteria and archaea). Given a FASTA file of contigs, it predicts genes, rRNAs, tRNAs, and other functional elements, then assigns functions by comparing to reference protein databases and HMM profiles. It outputs GenBank, GFF, and other formats compatible with downstream tools and genome browsers. Prokka handles common complications—overlapping ORFs, frameshifts, alternate start codons—while providing customizable databases so researchers can bias domain or strain-specific annotations. ... -
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AWS Data Wrangler
Pandas on AWS, easy integration with Athena, Glue, Redshift, etc.
An AWS Professional Service open-source python initiative that extends the power of Pandas library to AWS connecting DataFrames and AWS data-related services. Easy integration with Athena, Glue, Redshift, Timestream, OpenSearch, Neptune, QuickSight, Chime, CloudWatchLogs, DynamoDB, EMR, SecretManager, PostgreSQL, MySQL, SQLServer and S3 (Parquet, CSV, JSON, and EXCEL). Built on top of other open-source projects like Pandas, Apache Arrow and Boto3, it offers abstracted functions to execute... -
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DWSIM - Open Source Process Simulator
Simulate chemical processes using advanced thermodynamic models
DWSIM is an open source, CAPE-OPEN compliant chemical process simulator for Windows, Linux and macOS systems. Written in VB.NET and C#, DWSIM features a comprehensive set of unit operations, advanced thermodynamic models, support for reacting systems, petroleum characterization tools and a fully-featured graphical interface. DWSIM Pro is a commercial sibling of DWSIM built on top of open-source software. It offers extended features, comes with private support, and is accessible in the... -
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astap program
Stacking program, astrometric (plate) solver, fits file viewer
ASTAP, Astrometric STAcking Program, astrometric solver and FITS image viewer. This program can view, measure, "astrometric (plate) solve" and stack deep sky images. Main features: - Stacking of astronomical images including dark frame and flat field correction - Native fast astrometric (plate) solver. - Alignment using an internal star match routine, internal Plate Solver, manual or ephemeris. - FITS viewer with swipe functionality, deep sky and star annotation,... -
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Mobile Open-Source Software and Tools
Android, UIQ 3.0, Series 60 Edition 5 open-source software
Android, Symbian UIQ 3.0 and Symbian Series 60 Edition 5 open-source software, tools, libraries and themes. Most notable the FX-602P / FX-603P Simulator and the HP-45 Emulator are hosted here. -
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dibnn
Drop In the Bucket Neural Networks
One more lightweight neural network in C. -
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OpenNN - Open Neural Networks Library
Machine learning algorithms for advanced analytics
OpenNN is a software library written in C++ for advanced analytics. It implements neural networks, the most successful machine learning method. Some typical applications of OpenNN are business intelligence (customer segmentation, churn prevention…), health care (early diagnosis, microarray analysis…) and engineering (performance optimization, predictive maitenance…). OpenNN does not deal with computer vision or natural language processing. The main advantage of OpenNN is its... -
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DarkLight Cover/Calibrator
DIY project to build a cover, flat panel or combo flip-flat panel
The DarkLight Cover/Calibrator (DLC) is a DIY project to build a motorized telescope cover, flat panel, or a combination flip-flat system. Its modular design supports various setups: a 12V light panel without a servo for a wall-mounted calibration panel, a servo-only cover for sky flats, or both integrated into a flip-flat mechanism. The DLC also includes optional dew heating to reduce extra equipment and cabling. With available drivers, it works with ASCOM or INDI. We’re excited to... -
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A header file (cexcept.h) that provides Try/Throw/Catch macros similar to those available in C++ for error handling.
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PUMA Repository
Pascal Units for Medical Applications
The PUMA Repository is a collection of Pascal units for medical informatics. It contains reusable source code for a wide field of health-care application development. The code includes a support engine for the European Data Format (EDF and EDF+), converting functions for units of measurement and an HL7 engine. PUMA is compatible with Lazarus and Free Pascal. Some of the units also support other Pascal implementations including Delphi, winsoft Pocket Studio and other compilers. -
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AV3DNavigator
Um simples software de navegação 3D, desenvolvido em Java.
Um simples software de navegação 3D, desenvolvido em Java. -
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Modular, touch screen friendly navigation system with GPS tracking, realtime routing engine and support for various vector map formats. Works on a wide range of devices, from computers to smartphones.
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Autoplot
Autoplot is an interactive browser for data on the web
Autoplot is an interactive browser for data on the web. Give Autoplot a URL or local file name and it creates a sensible plot of the data. Autoplot allows you to interactively browse data stored in ascii, .cdf, netcdf, and many other formats. Autoplot's source has been moved to GitHub. Thanks to SourceForge for many years of hosting! -
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SimThyr
A simulation program for thyroid homeostasis.
SimThyr is a continuous simulation program for the human pituitary-thyroid feedback control system. Applications of this program cover research, including development of hypotheses, and education of students in biology and medicine, nurses and patients. -
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SimulaBeta
A simulation program for insulin-glucose homeostasis.
SimulaBeta is a simulation program for insulin-glucose feedback control. It is based on a nonlinear MiMe-NoCoDI model. -
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SPINA
Structure parameter inference approach for endocrine feedback control
SPINA is software for the rapid, reliable and accurate determination of constant structure parameters of endocrine feedback control systems. It is a class of static function tests that require nothing more than steady-state concentrations of hormones or metabolites obtained in vivo. The first version of this cybernetic approach had been developed for the evaluation of the functional status of the thyroid gland, i.e. thyroid's secretory capacity (gain of thyroid, GT or SPINA-GT) and sum... -
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DEVS-Suite Simulator
Component, CA, and CCA models; superdense time, DB repo, testing, etc.
Integrated component-based and cellular automata (CA) Parallel DEVS simulator: https://acims.asu.edu/devs-suite/ OFFERS: 1) synchronized execution & animation, 2) run-time linear/superdense I/O & state trajectories, 3) Action Level Real-Time modeling & simulation, 4) model checking, 5) ABM, 6) CA & composable CA playback, 7) KIB interaction modeling, 8) hierarchical model libraries, 9) Black-Box testing & debugging, 10) PostgreSQL repository, 11) FMU (OpenModelica), 12) OSATE (AADL)... -
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Jmol
An interactive viewer for three-dimensional chemical structures.
...Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other quantum chemistry programs. Files can be transferred directly from several databases, including RCSB, EDS, NCI, PubChem, and MaterialsProject. Multiple files can be loaded and compared. ... -
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openSkyMatch
Matches OpenScience Observatories images with astronomical catalogs
openSkyMatch is a collection of Linux shell and Python scripts designed for the OpenScience Observatories program. It automates the identification and matching of detected celestial objects in locally captured FITS images with entries in large-scale sky catalogs, notably Pan-STARRS1 DR2 (II/389/ps1_dr2). The toolkit supports data preprocessing, coordinate correlation, and catalog-based validation of astronomical detections. All tools are open-source and optimized for reproducibility and... -
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mers
Portable software and data related to Mersenne numbers
Portable software related to Mersenne numbers. Useful to automate certain tasks related to GIMPS (www.mersenne.org) for computers that cannot run the GIMPS software for whatever reason. Much of the code has been in use since 1990 or so by a few people. The project web site at https://mers.sourceforge.io/mersenne.html has data about Mersenne numbers from many people generated by this and other software, notably from the GIMPS project. -
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Adaptive Simulated Annealing (ASA)
simulated annealing optimization and importance-sampling
Adaptive Simulated Annealing (ASA) is a C-language code that finds the best global fit of a nonlinear cost-function over a D-dimensional space. ASA has over 100 OPTIONS to provide robust tuning over many classes of nonlinear stochastic systems. -
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JSmol
JavaScript-Based Molecular Viewer From Jmol
JSmol is the extension of the Java-based molecular visualization applet Jmol (jmol.sourceforge.net) as an HTML5 JavaScript-only web app. It can be used in conjunction with the Java applet to provide an alternative to Java when the platform does not support that (iPhone/iPad) or does not support applets (Android). Used in conjunction with the Jmol JavaScript Object (http://wiki.jmol.org/index.php/Jmol_Javascript_Object), JSmol seamlessly offers alternatives to Java on these non-Applet... -
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Open source Algol 68 implementations
Implementations for the Revised Report language
This project offers open source implementations for UNESCO/IFIP's Algol 68 (the Revised Report language). The project offers two implementations: Implementation 1 is Algol68G: a recent checkout hybrid compiler/interpreter by Marcel van der Veer, supporting arbitrary arithmetic, partial parametrisation, complex numbers, POSIX threads, GNU plotutils, GNU scientific library, curses, sound, TCP sockets, RegEx and PostgreSQL. Inplementation 2 is algol68toc, a port by Sian Mountbatten... -
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Rocketry Research Assistant
A LibreOffice Base database for tracking rocketry research projects.
Research and engineering projects collect a lot of data. Data is collected during the development of the launch vehicle and payload. Data is collected during testing of the system, and data is collected during the actual flights. Working with data doesn’t stop there. Once the data has been collected it must be reviewed to make sure that the project is performing as expected. Data analysis is a critical part of any research or engineering project. To help with a basic understanding of how... -
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Res Medicinae
Applications for use in Medicine
Res Medicinae is the attempt to overcome high pricing in the realm of medical information systems and to provide users with a stable, platform independent, extensive system using latest technology and being open to many other medical systems.
