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Showing 36 open source projects for "dr."
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1
atomes
Analysis, visualization, edition of 3D atomistic models
...atomes also provides an advanced input preparation system for further calculations using well known molecular dynamics codes: - Classical MD : DL-POLY and LAMMPS - ab-initio MD : CPMD and CP2K - QM-MM MD : CPMD and CP2K atomes is developed by Dr. Sébastien Le Roux, research engineer for the CNRS Dr. Sébastien Le Roux works at the Institut de Physique et Chimie des Matériaux de Strasbourg. -
2
E-Learning Simulator: VUONG-DCP
Data Compression Simulator for E-Learning:
...Simulators has a web client for E-Learning. It is focused for students and data compression interests., Support-WIKI https://sourceforge.net/p/vuong-dcp/wiki/Home/ Project founder: Dr. The Anh Vuong (Admin) https://vuongblog.wordpress.com/vuong-publications/ -
3
Statistics101 - Resampling Statistics
Use simulation to perform statistical analyses.
Statistics101 is an Integrated Development Environment (IDE) that uses a simple, powerful language called “Resampling Stats” to develop Monte Carlo programs to analyze and solve statistical problems. The original Resampling Stats language and computer program were developed by Dr. Julian Simon and Peter Bruce as a new way to teach Statistics to social science students. Of course, social science students aren't the only ones who can benefit. Anyone who wants to learn statistics will find that the resampling approach helps in understanding statistical concepts from the simplest to the most difficult. In addition, professionals who want to use resampling, bootstrapping, or Monte Carlo simulations will find Statistics101 helpful. ... -
4
RAFTS³G
Rapid Alignment Free Tool for Sequences Similarity Search to Groups
...) % More informations about RAFTS3 in: https://sourceforge.net/projects/rafts3/ % Professional and Technical Education Sector from the Federal University of Paraná - Bioinformatic Lab. % Federal of Paraná University - UFPR % Dr. Alcides Vieira Arco-verde street, 1225 % CEP: 81520-260 Jardim das Américas % Curitiba – PR % Brazil % % Developers and colaborators: % Roberto T. Raittz % Bruno T. L. Nichio % Ricardo A. Vialle % Aryel M. R. de Oliveira % Camilla R. Pierri % Leticia G. C. Santos % Alexandre Q. Lejambre % Nilson A. ... -
Total Network Visibility for Network Engineers and IT ManagersThis means every device on your network, and every interface on every device is automatically analyzed for performance, errors, QoS, and configuration.
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XRD CUBIC
Simulate crystal cell length (a), Miller indices {h, k, l}, d-spacing
...Enter minimum and maximum unit cell length (in Angstroms) All the possible cubic crystal parameters, as well as diffraction angle with reference to d-spacing between the given Miller indices (h k l planes), will be simulated. Designed by: Dr. M Kanagasabapathy, Asst. Professor, Department of Chemistry Rajus’ College, Madurai Kamaraj University, Rajapalayam, (TN) INDIA 626117 Home Page: https://www.enote.page/2021/12/XRD-Cubic.html -
6
MAGeCK
Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout
Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at Children's National Medical Center. We thank the support from Claudia Adams Barr Program in Innovative Basic Cancer Research and NIH/NHGRI to develop MAGeCK. -
7
Celestial Precomputation
Sight Reduction for Air Navigation with Python
Warning: I found an error if the DR position is on the southern hemisphere. The PUB249 pdf files did not show this error and are correct (as far as I checked). All Revisions 8+ and the Windows release have been fixed. This Python TK application calculates a good set of stars for a 3 star fix, makes all calculations similar to the FAAs Celestial Computation Sheet (see FAA doc FAA-H-8083-18). -
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HostDesigner
General purpose de novo molecular design software
...Download includes User's Manual, HostDesigner 4.3 source code (in Fortran), data files, example input, HDViewer executables for MacOS, Linux, and Windows, and mengine source code (in C). HostDesigner was developed and posted by author Dr. Benjamin P Hay -
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DeepScaleTool
Estimation of deep-submicron technology scaling
...The tool is also helpful to conduct fair comparison of the circuits' performance, energy, and power dissipation across different technology generations. Please make sure you enable macros while opening the DeepScaleTool.xlsm file. This tool was developed by Satyabrata Sarangi and Dr. Bevan Baas at UC Davis. This work was presented at 2021 IEEE ISCAS. To cite the paper - https://ieeexplore.ieee.org/abstract/document/9401196 S. Sarangi and B. Baas, "DeepScaleTool: A Tool for the Accurate Estimation of Technology Scaling in the Deep-Submicron Era," 2021 IEEE International Symposium on Circuits and Systems (ISCAS), 2021, pp. 1-5, doi: 10.1109/ISCAS51556.2021.9401196. -
Atera IT AutopilotIT Autopilot takes the pressure off your team by handling first-tier support across the channels your end users already live in — email, chat, Slack, Teams, and your Customer Portal. It doesn’t just respond to end-user queries, issues, and crises — it solves them.
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Arabic Corpus
Text categorization, arabic language processing, language modeling
The Arabic Corpus {compiled by Dr. Mourad Abbas ( http://sites.google.com/site/mouradabbas9/corpora ) The corpus Khaleej-2004 contains 5690 documents. It is divided to 4 topics (categories). The corpus Watan-2004 contains 20291 documents organized in 6 topics (categories). Researchers who use these two corpora would mention the two main references: (1) For Watan-2004 corpus ---------------------- M. -
11
TIM
A raytracer for forbidden optics
*** TIM's (now Dr TIM's) source code has moved to https://github.com/jkcuk/Dr-TIM *** TIM is a raytracer that was originally developed to simulate optical components called METATOYs, but it has since then developed into something much more general. Amongst other things, TIM can also calculate random-dot stereograms and anaglyphs and visualise ray trajectories. -
12
Vector network Analyzer (VNA)
Save Touchstone files and load calibration kits from HP & Agilent VNAs
... * 'calkit' to upload calibration kit definitions to the VNA, including the properties of the shorts, opens and thrus. This is alpha software, and has little documentation. Contact the author, Dr. David Kirkby at https://www.kirkbymicrowave.co.uk/ drkirkby@kirkbymicrowave.co.uk for help. -
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JSiteDescriptor
Binding site descriptor generation for SVM based classification.
A set of java programs that extract coordinate and chemical information from PDB files. The binding site regions are extracted using grid based scheme. For binding site, spatio-chemical descriptor is generated based on PocketMatch algorithm of Dr. Kalidas (author of this project too). -
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WireFactory Simulator
Small factory simulator for control logic test purpose
...The WFS were mainly tested with FBDK (http://www.holobloc.com/). Wire Factory has been implemented to help to test more complex automation systems during a doctorate course under guidance of: Supervisor: Prof. Dr. Roberto Silvio Ubertino Rosso Jr. Co-Supervisor: Prof. Dr. André Bittencourt Leal at Santa Catarina University State (UDESC) located in Joinville/Brazil. CONTACT INFO ------------ Leandro Israel Pinto leandroip.com leandro.israel.p@gmail.com -
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MSqBAT
Label-free protein quantification for LC-MS
MSqBAT is a freely-available all-platform software application for label-free quantification of proteins from LS-MS data. It was developed in the lab of Dr. Christoph Rösli at the Heidelberg Institude for Stem Cells and Experimental Medicine (HI-STEM) and the German Cancer Research Center (DKFZ). It’s main features are 1) Label-free, MS1-based quantification 2) Support both LC-MALDI-MS- as well as LC-ESI-MS data 3) Supports both GeLC-MALDI-MS- and GeLC-ESI-MS data 4) Convenient, graphical user interface Acknowledgements The development of MSqBAT is kindly supported by YourKit Java Profiler. -
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LeapFrog Optimizer
Open Source Optimizing Algorithm Written in Python
name: leap frog optimizer version: 0.5 ALPHA author: Mark Redd email: redddogjr@gmail.com written for python version: 2 optimizer algorithm website: http://www.r3eda.com/ about: This optimizer was written based on the algorithm published by Dr. R. Russell Rhinehart. A full explanation of the algorithm can be found at the following URL: http://www.r3eda.com/leapfrogging-optimization-algorithm/ The following are "key references" published on the optimization website explaining the technique: - Rhinehart, R. R., M. Su, and U. Manimegalai-Sridhar, “Leapfrogging and Synoptic Leapfrogging: a new optimization approach”, Computers & Chemical Engineering, Vol. 40, 11 May 2012, pp. 67-81... -
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Trowel - Sequencing Error Corrector
Error Correction Module for Illumina Sequencing Reads
...This tool is the first tool that uses a quality threshold instead of a coverage cutoff in order to extract trusted k-mers. This tool guarantees high accuracy and speed. This tool has been developed since 21. Jan. 2013 by Euncheon Lim in Prof. Dr. Detlef Weigel's Lab in Max-Planck Institute for Developmental Biology. First of all, you have to install the exact version of boost(>=1.53.0), google sparse hash(>=2.0.2), GCC(>=4.6), autoconf(=2.69), and automake(=1.13). -
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p-TAREF
Plant miRNA target prediction tool
Developed by Dr Ravi Shankar (Corresponding author) and Ashwani Jha @ SCBB, CSIR-IHBT. p-TAREF stands for plant TARget REFiner. It identifies plant microRNA targets on the basis of multiple feature information. Read more http://www.biomedcentral.com/1471-2164/12/636 Query, comment etc please mail any one of us @ ashwanijha.bioinfo@gmail.com or ravish9@gmail.com -
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flow visualization toolbox
matlab 2D image processing GUI toolbox for flow visualization
A general flow visualization Matlab toolbox for image processing of some common planar/surface visualization techniques from PLIF (Planar laser induce fluorescence) for tracer distribution, BOS (background oriented Schlieren) for density, TSLC (Temperature sensitive liquid crystal) for thermal and PSP (Pressure sensitive paint) pressure distribution measurement. This work is part of author's PhD study, under Dr S. Zhong @ the University of Manchester's supervision, guidance and support. Both GUI and command line interface are provided for newbie and advanced user. Image can be processed into contour image, matlab mat and tecplot data. This toolbox can be conveniently extended for 2D image processing in other disciplines, for example, surface stress measurement, inferred thermograph, PIV. ... -
20
scapcs
Computer Assistant for ICD-10-PCS Coding
This is Dr Shee's Computer Assistant for ICD-10-PCS Coding system. Brief as SCAPCS, Read like " scabies" and use a scabies picture as it's icon. By Using this program, the user can coding the ICD-10-PCS very easily without any assistant from the original ICD-10-PCS tabular. The first version is the Chinese version at 2014-05, An i18n version was released at 2014-08-23 (v 0.99b). -
21
House Builder
This program solves the house building problem.
The file house_builder_backtrace.f is a Fortran program for solving the house building problem as described by Dr. James Grime (aka singingbanana). One of the many 17 point solutions is 0.029 0.542 0.852 0.270 0.710 0.423 0.926 0.138 0.620 0.343 0.777 0.207 0.485 0.971 0.092 0.667 0.382 There are no 18 point solutions. -
22
NoCTweak
a Parameterizable Simulator for Early Exploration of Networks On-Chip
...This tool is a cycle-accurate simulator and is open-source using SystemC, a C++ plugin, which is used to quickly model complex systems at a higher level but less details than RTL. NoCTweak was developed by Dr. Anh Tran and Dr. Bevan Baas at UC Davis. NoCTweak has been extended and integrated into McSim, a project developed by Dr. Abdoulaye Gamatié, Dr. Gilles Sassatelli, Dr. Manuel Selva et al. at LIRMM lab. McSim is a simulator for NoC-based many-core platforms, and is a part of the DreamCloud European project. DreamCloud allows dynamic resource allocation in many-core systems targeting high performance and energy efficient embedded applications. ... -
23
Gnuplot2TightPDF
Python script that produces a tight pdf from gnuplot with psfrag text.
...The resulting pdf file doesn't contain any extra white-spaces around it and as such can be comfortably included in any (pdf)LaTeX file. Requires: Python 2.4 - 2.7, LaTeX and the system commands ps2epsi and epstopdf which comes in with any ghostscript installation. Dr. Shibaji Banerjee Department of Physics St. Xavier's College, Kolkata Included: Main file: gpt2pdf.py demo file: demo.plt demo file; K.plt and K.txt Usage: gpt2pdf demo gpt2pdf K The script is written in pure python. It is easy enough for customization. -
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ArgooMap
A map-based discussion forum ("argumentation map")
ArgooMap is an online, map-based discussion forum, which allows participants to reference their contributions to geographic locations. Different versions of ArguMap and ArgooMap/Argoomap were developed by students supervised by Dr. Claus Rinner at Ryerson University (Toronto, Canada) with partial funding from the GEOIDE Network of Centres of Excellence and DAAD, the German Academic Exchange Service. Past and current developers at Ryerson and the University of Muenster include: - Carsten Keßler - Marius Austerschulte - Sepehr Mavedati - Sami Munshi - Matrica Joshi Alternative versions (not yet available here) were developed by: - Aaron Sani (Ryerson) - Soheil Boroushaki (Univ. of Western Ontario) - Ana Simao (University College London) The ArgooMap Sourceforge project page contains two implementations of the package, which diverged from a single older version, ArguMap. ... -
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...Java Open-source software for attention assessment, based on NAFW project (Neuropsychological Assessment Framework). © 2008 - UNIFESP / Igor Jirus Ramos Ribeiro / Prof. Dr. Carlos J. R. Campos.
