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OpenJUMP is a community driven fork of JUMP the "Java Unified Mapping Platform" GIS software. The original JUMP was developed by Vivid Solutions, released under GPL2 in 2003 and discontinued in 2006.
During 2004 already some enthusiastic developers joined together to enhance further the features of JUMP. They launched an independent development branch called OpenJUMP. The name gives credit to the original JUMP development, and at the same time describes the objectives of this project to...
GapFiller is a seed-and-extend local assembler to fill the gap within paired reads.
It can be used for both DNA and RNA and it has been tested on Illumina data.
GapFiller can be used whenever a sequence is to be assembled starting from reads lying on its ends, provided a loose estimate of sequence length.
Open Street Map (OSM) tools, OSM/XML parser, tag extractor
...osm_cut: create rectangular extracts
tr_view: view tool for trafalgar files, including fast osmtoolz import filter, GPX an KML track import (see screenshots)
There is a small script included which helps to transform from *.bz2 to *.gz using a named pipe (seems not to work for cygwin)