Search Results for "binary analysis"
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Showing 38 open source projects for "binary analysis"
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Vedo
A python module for scientific analysis of 3D data
...Export meshes as ASCII or binary to VTK, STL, OBJ, PLY formats. Analysis tools like Moving Least Squares, mesh morphing and more. Tools to visualize and edit meshes (cutting a mesh with another mesh, slicing, normalizing, moving vertex positions, etc..). Split mesh based on surface connectivity. Extract the largest connected area. Calculate areas, volumes, center of mass, average sizes etc. -
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OSRA is a utility designed to convert graphical representations of chemical structures and reactions, as they appear in journal articles, patent documents, textbooks, trade magazines etc., into SMILES or SD file format- a computer recognizable molecular structure You can find links to the binary executables here: https://sourceforge.net/p/osra/wiki/Download/
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Graph Plotter
GP is a tool to analyse numerical data
GP is aimed to be simple and fast tool to analyse numerical data. It does not claim to replace all other plotters. -
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CRC RevEng
Arbitrary-precision CRC calculator and algorithm finder
CRC RevEng is a portable, arbitrary-precision CRC calculator and algorithm finder. It calculates CRCs using any of the 113 preset algorithms, or a user-specified algorithm to any width. It calculates reversed CRCs to give the bit pattern that produces a desired forward CRC. CRC RevEng also reverse-engineers any CRC algorithm from sufficient correctly formatted message-CRC pairs and optional known parameters. It comprises powerful input interpretation options. Compliant with Ross Williams'... -
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echoes
Echoes is a radio spectral analysis software for SDR devices
Echoes it's a radio spectral analysis software for SDR devices, designed for meteor scattering purposes. The older releases supported only RTL-SDR devices. They are very cheap SDR based on DVB-T TV tuner dongles based on Realtek's RTL2832U chipset. Starting from 0.50 Echoes embeds SoapySDR allowing the support of many other SDRs. Echoes doesn't demodulate neither decode any human-made signal. Its main goal is to analyze and record the total power of natural signals and generate... -
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Open Grid Analysis and Display System
OpenGrADS provides extensions and interfaces for GrADS.
The Grid Analysis and Display System (GrADS) is an interactive desktop tool for easy access, manipulation, and visualization of earth science data. The OpenGrADS Project seeks to develop advanced interfaces and extensions based on the main GrADS engine. -
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JDecisiontable
Stop to rack your brain, start using process-oriented decision tables!
This tool is about a method called "process-oriented decision tables". These are decision tables but different from "normal" decision tables. They fix the flaws of traditional decision tables making it a joy to work with. But they keep all benefits of traditional decision tables. First of all they present the logic in a very dense form. 1. Explore all possible combinations of conditions and actions by question-and-answer. 2. Have a compact one-sheet-view on complex logic. ... -
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javahexeditor Java Hex Editor
A hex editor Eclipse plugin and multi-platform desktop application
You can install the latest Eclipse plugin version from the update site https://javahexeditor.sourceforge.io/update or the Eclipse Marketplace https://marketplace.eclipse.org/content/java-hex-editor. Older versions of the Eclipse plugin are available via the update site for the version, e.g. https://javahexeditor.sourceforge.io/update/0.5.1 You can download the latest stand-alone version and older versions on the "Files" tab. -
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Jojos Binary Diff
Binary Diff and Undiff Utility
JDIFF is a program that outputs the differences between two binary files, either in binary format or in human readable format (detailed or summarized) and then allows to reconstruct the second file from the first one and the diff-file. -
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lpsolve
Mixed Integer Linear Programming (MILP) solver.
Mixed Integer Linear Programming (MILP) solver lp_solve solves pure linear, (mixed) integer/binary, semi-cont and special ordered sets (SOS) models.lp_solve is written in ANSI C and can be compiled on many different platforms like Linux and WINDOWS This project is moved to github: https://lp-solve.github.io/ -
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RxCalc
RxCalc is a calculator for the analysis of multi-stage receiver.
RxCalc is a calculator for the analysis of multi-stage receiver. The software can calculate cascaded and system parameters: gain, noise, sensitivity, input and output P1dB and IP3, noise floor, spur-free dynamic range, MDS, SNR, and others. Sources code: https://github.com/arhiv6/rxcalc Binary package: http://sourceforge.net/projects/rxcalc/ -
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BinCoMerge
Compare binary files in hexadecimal view
BinCoMerge is a binary files diff at byte resolution. It shows hexadecimal and raw ASCII data. BinCoMerge is seeking for common blocks from the bigger ones to the lower ones. It works by levels of minimum block sizes which are powers of 2. For example, with a file sizing between 16 KiB and 32 KiB, Bincomerge will firstly seek for all common blocks bigger than 16 KiB. Then, it will seek for all common bigger than 8 KiB, then 4KiB, 2KiB, 1024 Bytes... Because it works by levels, BinCoMerge... -
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fcGENE: Genotype format converter
Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)
Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST. Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam. Similarly all kinds of imputation of outputs are also accepted. Formats which can be generated by... -
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XDrawChem
XDrawChem is an application for chemistry drawing and analysis.
XDrawChem is an application for drawing and analyzing chemical structures and reactions. Please visit the website for full details. Download source and binary releases here, and clone the source from GitHub at the external link above. -
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experix laboratory control system
instrument control, data acquisition display and analysis
Experix is a command-line driven environment for laboratory data acquisition and device control and graphical presentation and analysis of data. Written in C for GNU-Linux . Tested on PC and Raspberry Pi. The core is written very generally in order to support applications by means of script files. Device interfaces: PCMCIA daq (2 devices tested) via kernel module with interrupt handler and memory-mapped data; USB daq (1 device tested) using libusbx; running an equipment servicing program... -
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IQM-Plugin-FFI
FFI - fractal fragmentation index
This is an IQM plugin to compute the FFI index for binary digital images. This index represents a value for the compactness of an object. FFI is the difference between fractal dimensions of the area and its boundary. Fractal dimensions are computed with the popular Box counting method or the Pyramid method. Details can be found in: Andronache etal. Fractal analysis for studying the evolution of forests, Chaos, Solitons & Fractals, 2016, Vol 91, 310-318. -
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hexcompare
console-mode visual binary diff
hexcompare is a curses-based utility to compare and identify differences between two binary files. These differences are then represented visually with an interactive block diagram. -
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CRAFT HPC Floating-point Analysis
CRAFT: Configurable Runtime Analysis for Floating-point Tuning
CRAFT (Configurable Runtime Analysis for Floating-point Tuning) for HPC (High-Performance Computing) uses binary instrumentation to perform runtime analysis of floating-point code, detecting cancellations and making precision level recommendations. NOTE: THIS PROJECT HAS MOVED TO GITHUB!!!! https://github.com/crafthpc/craft -
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Ymap - Yeast Mapping Analysis Pipeline
Pipeline for large-scale genome changes analysis of genome datasets.
The active use repository has migrated over to: https://github.com/darrenabbey/ymap The repository here was errantly created with some large binary files included. Attempts to extract the files from the history here have failed. A copy of the history was successfully scrubbed and then hosted at github. -------- Eukaryotic pathogens have complicated and dynamic genomes. To facilitate analysis of copy number variations (CNV), single nucleotide polymorphisms (SNPs), and loss of heterozygosity (LOH) events in Candida albicans, the most common human fungal pathogen, we developed a pipeline for analyzing diverse genome-scale datasets from microarray, deep sequencing, and restriction site associated DNA sequence experiments for clinical and laboratory strains. ... -
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MatrixUser
A Multi-functional GUI-based Program for Image Processing and Analysis
The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation. However, within Matlab, most of image manipulation functions are limited or... -
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SnowMicroPyn
Python based reader for SnowMicroPen® .pnt measurements
SnowMicroPyn is an opensource reader for SnowMicroPen® files in binary .pnt format. The reader is Python based and published as source code as well as compiled executable for Windows, Linux and Mac. The software is preliminary, thus please report bugs. For further information, please read the Readme.txt in the download section. The SnowMicroPen® (SMP) is developed by the WSL Institute for Snow and Avalanche Research, Davos. The SMP is the first high-resolution snow penetrometer. It is... -
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GENIE (GEne-geNe IntEraction)
GPU based Parallel Gene-Gene Interaction Analysis
...Most of the latest Central Processing Units (CPUs) have multiple cores, whereas Graphics Processing Units (GPUs) also have hundreds of cores and have been recently used to implement faster scientific software. However, currently there are no genetic analysis software packages that allow users to fully utilize the computing power of these multi-core devices for genetic interaction analysis for binary traits. Here we present a novel software package GENIE, which utilizes the power of multiple GPU or CPU processor cores to parallelize the interaction analysis. Citation: Chikkagoudar, S., Wang, K., & Li, M. (2011). ... -
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ParaSim
Parallelized calculation of molecular similarities
Diversity assessments and comparisons of large compound databases require calculating similarities of millions of compounds in an affordable time. ParaSim addresses this challenge by parallelizing the calculations according to the number of computing cores available on a single machine. It is optimized for the throughput of very large numbers of query structures against very large numbers of reference structures. As as special feature, ParaSim allows to store and and to access frequently... -
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WaveSorter
A powerful, versatile tool for offilne spike analysis and sorting
WaveSorter emphasizes dynamic visualization and versatility. Slider controls let the user select any coefficient or sample from any of several transforms, which can then be plotted to either axis of a 2D histogram (scatterplot). Within the waveform space, cursor-based controls let the user select subregions of the waveform space or individual waveforms to view. The user may cluster waveforms manually or via one of several popular clustering programs. The classification along with waveform... -
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SpiKeDeteKt
An automatic spike detection program to be used with new KlustaKwik
This is an automatic spike detection program which takes account of probe geometry and produces a .mask file to be used with the new masked version of KlustaKwik. We recommend you use Python 2.6 or 2.7, e.g. a free academic version can be obtained from Entthought Python. The input files for SpiKeDeteKt are: .dat (raw data file) .probe (probe file, described below - user constructed) parameters.py (optional - otherwise it uses defaultparameters.py) SpiKeDeteKt outputs...
