Search Results for "engineering" - Page 95
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Showing 14874 open source projects for "engineering"
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BisSNP
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other... -
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DockoMatic is a GUI application that is intended to ease and automate the creation and management of AutoDock jobs for high throughput screening of ligand/receptor interactions.
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TdhNet
Free Hydraulic Model for Water Systems
Summary of Features: FREE (no ads, no time limitations) Run on MS Windows or Linux Unlimited Network Size Unlimited ID Size (for all entities) Database storage and querying for input data and model results Contours for displaying model results Graphical data entry Attachable, searchable notes Epanet file compatibility -
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Trasforma coordinate SIAN
Trasforma coordinate da epsg per google maps
Il programma TrasfSianItalia, da usare con javaproj scaricabile anch'esso, è nato dalla necessità di trasformare le coordinate visualizzate sul SIAN. Il programma si occupa semplicemente di effettuare la trasformazione delle coordinate per i codici epsg e di visualizzarle su Google maps. Le coordinate trasformate si possono salvare e stampare. Richiede java 8 per funzionare. Per installazione completa cliccare su browse all file e scaricare TrasfSianItalia35.zip. Per gli aggiornamenti... -
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Capsim(r) C Text Mode Kernel(TMK),DSP and communication blocks, topologies, libraries and tools for the development of high performance block diagram digital signal processing and communications systems,built in interpreter for scripting.SystemC support.
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TOFSIMS
R/Bioconductor toolkit for mass spectrometry data
The tofsims project is an R/Bioconductor toolkit designed for processing, analyzing, and visualizing imaging mass spectrometry data from Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) instruments. It supports importing raw and preprocessed data from popular instrument platforms (e.g. IONTOF, Ulvac-Phi) and provides methods for mass calibration, peak picking, and peak integration. The package allows transformation of spectra into 2D image structures (mass images), with operations... -
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EnzymeFinder
This is a bio-informatic project for finding enzyme
This is a bio-informatic project for finding enzyme. It is only free for academic and non-commercial users. Any commercial use should obtain our permission. Please contact wugang@ise.neu.edu.cn or ccdatabank@hotmail.com. -
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Acoustic Research Tool (ART)
Acoustic Simulation Library for Frequency and Time Domain Simulations.
ART is a flexible simulation framework for wind instruments. It includes a growing library of modelling elements. So far bore discontinuities, branches, tone holes, cylindrical and conical tubes, Bessel horns and bent tubes are available for frequency domain modelling. In the time domain generic bidirectional propagation elements, scattering elements, fractional delays, convolution with reflection functions and general z-domain networks are available and can be described using MuParserX... -
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KalypsoBASE is a Desktop-GIS built on Eclipse. It's focus lies on modelling gis data using GML Application-Schemata. Features contain generic dialogs based on GML, maps based on OGC's SLD, and other tools like a charting framework or API for timeseries
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SiBELia
Synteny Block ExpLoration tool
Sibelia: A comparative genomic tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms. -
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This site hosts the source code for C++ version of the Broker for SBW, NOM module, advanced simulation suite, analysis applications and model editors.
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aXonica
An installation package for freeware bioimaging tools
Download link: https://www.dropbox.com/s/jelbrho05m7yg8y/NeuroX_v.1.0.zip?dl=0 For Instructions Manual see Download section. -
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INDI is an instrument neutral distributed interface control protocol that aims to provide backend driver support and automation for a wide range of Astronomical devices (telescopes, focusers, CCDs..etc). Project migrated to Github: https://github.com/indilib/indi
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CABBaGe
Classification Algorithm Based on a Bayesian method for Genomics
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Ycad is a library of CAD functions in Java. Currently only DXF is supported for reading, viewing and writing. The DXF drawing may be rendered to a Graphics object for printing or imaging.
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ASSA
MOVED TO https://github.com/vanya-antonov/assa
THE DEVELOPMENT AND DISTRIBUTION OF THIS PROJECT HAVE BEEN MOVED TO GITHUB: https://github.com/vanya-antonov/assa -
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OpenDSE
Open Design Space Exploration Framework
OpenDSE is a design space exploration framework for embedded systems, written in Java. It follows the Y-chart approach where an application consisting of data-dependent tasks is mapped to an architecture consisting of resources. -
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Panacea
PAN And Core-gEnome Analysis
A tool to calculate the Pan-Genome of a set of annotated genomes -
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FullFun
A software package for fullerenes and their functionalized derivatives
FullFun (stand for Fullerene Functionalization) is an open source software package, licensed under the GNU General Public License (GPL). It provides an efficient and easy way to generate, analyze and predict fullerene-related structures. The package consists of four programs: CSIOpt, XSI, XSIOpt and bkcage. They are implemented using the C and C++ languages and distributed under an open source licence. The code can be compiled and executed on Linux, Mac OS X and Windows (via DOS) operating... -
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Mixture100
Simply percent calculator
For making various mixtures, like homemade alcohol, brine or e-liquids. Add a components, set a percentage in total, set how much I want a given mixture and save, share or print recipe. -
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Myo Mapper
An open-source software to map Myo data into OSC and MIDI messages.
MyoMapper, an open-source software to rescale and centre and map Myo data into OSC and MIDI messages. -
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fcGENE: Genotype format converter
Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)
Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST. Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam. Similarly all kinds of imputation of outputs are also accepted. Formats which can be generated by... -
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scalpel
Genetic variants discovery tool
Bioinformatics pipeline for discovery of genetic variants from NGS reads. -
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DualTranscriptDiscovery
Transcript-discovery approach for gene feature delimitation by RNA-seq
This project contains Python scripts usable for a dual transcript-discovery approach that improves the delimitation of gene features from RNA-seq data in the chicken model. Documentation: http://bio.biologists.org/content/biolopen/suppl/2018/01/17/bio.028498.DC1/BIO028498supp.pdf Citation: Orgeur M., Martens M., Börno S. T., Timmermann B., Duprez D. and Stricker S. (2018). A dual transcript-discovery approach to improve the delimitation of gene features from RNA-seq data in the...
