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The project would include the development of XUL, CSS and Javascript components to assist biologists in sequence manipulations, data mining, data analysis, etc.).
An open-source collection of materials for lectures, tutorials, labs, and software for a variety of primarily Computer Science courses. The materials include various course notes, presentation slides, source code samples, etc.
The Open Instrumentation Project provides open source software for graphical user interface and control of computer-based lab instruments. Current instruments include an oscilloscope, waveform generator, CircuitGear, multimeter and network analyser.
Pamvotis is a Wireless LAN Simulator for all the current physical layer extentions of the IEEE 802.11 (IEEE 802.11 a/b/g) standard and for the IEEE 802.11e Draft for Quality of Service in WLANs.
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GsTL is a C++ library that provides a comprehensive set of tools and algorithms for geostatistics. The algorithms provided include kriging, cokriging, sequential simulation and p-field simulation.
FLXLab is a program for running psychology experiments. Capabilities include presenting text and graphics, playing and recording sounds, and recording reaction times via the keyboard, joystick/button box, or a voice key. Windows/Mac/Linux.
My personal computing suite provides some programs I developed as a hobbyist and currently include a lambda calculus interpreter and a calculator which solves arithmetic expressions; both are written in C++.
QGis Python Plugin to create named map themes to switch the visibility of all layers belonging to theme.
Experimental working prototype with functionality to include in future version of QGIS.
TMAJ is software for Tissue MicroArrays (TMA's). Patients, specimens, blocks, slides, cores, images, and scores can all be stored and viewed. Features include advanced security, custom dynamic fields, and an image analysis program.
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A tool for visualizing regular polytopes in stereographic projection. Capabilities include: a large database of Coxeter polytopes, 6-axis motion control, animation, fly-though, stereo viewing, high-res capture, depth-blur, and many style options.
2Sky is a complete user-friendly commercial astronomy planetarium application for the PalmOS platform realeased by Kevin S. Polk as open source. Features include: stars, deep sky objects, planets, comets, asteroids, moons of Jupiter, meteor radiants.
A lyrical analysis and classification tool focused specifically on rhyming style in rap lyrics. Functions include phonetic transcription, rhyme visualization, and rapper classification.
MAXIMUS is a genome assembly pipeline which takes the best out of multiple reference assemblies and de novo assembly. The benefits of this approach include better assembled repetitive regions, less gaps and higher accuracy for the resultant assembly.
--UPDATE-- New Version is now integrated in the official PyMOL plugin repository! --UPDATE--
The BNI (Beyond Normal Interaction)- Tools is a plug in for the PyMOL molecular visualization system which adds additional functionalities and presets to the PyMOL GUI and also adds useful extended commands.
This project aims at developing R-based Software for the analysis of typical neuroscientific data. These will include time resolved bootstrap tests and fitting and testing of psychometric functions.
*** There is now an active effort to include a QT-only (no KDE) based IDE for Octave that is part of the main Octave source code. I recommend that you build and test that version of an IDE, as it will be the most supported option going forward. ***
The octavede is a development environment for the Octave mathematical software package. Octave normally is run in a terminal.
GPSBabel converts and transfers data like waypoints, tracks & routes.
...Some of the county/state files remain active, but no version of GPSBabel should be downloaded from this site. **
GPSBabel reads, writes, and manipulates GPS waypoints in a variety of formats. Over 100 supported formats include GPX, GeoJSON and Garmin serial and USB protocols, Geocaching Pocket Queries and *.loc and more!
For Windows, Linux, Mac.
Various EEG Apps include several EEG based tools (brainwave analysis tools, brainwave controlled games) with associated hardware description given as example. The principal goal is to provide a brainwave activated controller headset coupled to a PC.
VidL is an online video and image annotation program that allows for the management of workers and data via a webserver. Annotate videos and images with meta data or other time related markers. Use include research data collection and annotation, video i
C Ansi Code to allow developers to use a Web Browser as GUI for a console program, it write on a socket html widgets and read user choice through FORM SUBMIT. It include a little web server. Very compact as Html managment consist in 2 modules
side4linux is a simple IDE intended for source code programming in C, G-code and AVR/ARM Assembler with an emphasis on developing manufacturing and embedded applications. It will be developed to include simulators, PCB software, compilers etc.
A Python function library to extract EEG feature from EEG time series in standard Python and numpy data structure. Features include classical spectral analysis, entropies, fractal dimensions, DFA, inter-channel synchrony and order, etc.
LabDiary is a program for managing laboratory experiments in a sophisticated way. It is very easy to use - you can link experiments logically with each other, associate files to an experiment and structure all your data.