Search Results for "users" - Page 77

It maps sequencing reads with MTB reference genome (H37Rv) using NCBI blast, and finds out mutation sites.

A bioinformatics tool to identify and remove rRNA sequences from metagenomic and metatranscriptomic datasets. The rRNA-like sequences are classified by domain, subunit. and bacterial phyla. Coverage plots for the top hits are provided as well.

Displays mummer/nucmer mappings and prints PNG to stdout via the "show-coords -lcdTH" output. The output file is <coords-output>.png. Command line options allow for different features when producing the image. Within the code there are comment blocks which give examples of how to further customize it i.e. grouping based on name similarity, color, etc. This program is aimed at providing full customization within the limits of the Bio-Graphics module. Current version supported is Bio-Graphics-2.25

current build is now 12_8_11: Code reformulation, not only to improve/repair, but also to take into account libraries that I don't release (e.g., the applet one). The Jars are compiled under Sun Windows JVM 1.7.0_1.

...STAMPCHA is designed to show a series of images to user and ask a question based on that. only one image is the correct answer.Unlike other CAPTCH software its very easy for the users to respond.Users only need to type the relevant image number in the text box. Since the order of the images and the questions are generated randomly each time user visit the page Its practically impossible for robots to break. You can add your own questions and images which makes it even harder for the robot to break.

MetaMaster is a Java-based desktop application for defining, managing and manipulating metadata associated with a collection of data files or datasets (both locally and on the network) which are bundled together into "data packages". ANDS-funded

Application to use MRI brain atlases composed of template images and label images pairs. This application will segment MRI images using labels provided by the atlas. The labels are combined using the voting fusion technique. Please visit our page at http://www.brain-development.org.

Geo-Spatial Data Viewer (GSDView) is a lightweight viewer for geo-spatial data and products. It is written in python and Qt4 and uses the GDAL library. GSDView is modular and has a simple plug-in architecture.

Alignment of the assembled sequences to a reference genome is a common way to obtain a likely order for the contigs, though most of times the final decision is taken by the user. We present the jContigSort, a tool that sorts the genome contigs.

Randaudio lets you use your soundcard as a hardware random number generator.

Diva is a command-line tool for dispersal-vicariance analysis, a simple method for inferring the distributional history of organisms (Ronquist, F. 1997. Systematic Biology 46:193-201).

Rachis, A Cross-platform Hierarchical Identification System. Rachis is an application for the cataloguing and identification of entities (taxa). It is being implemented from scratch, but is based heavily on the lessons learned from Taxabase.

OceanSync is an Hadoop Management System that allows users to control a variety of aspects of Hadoop. This includes a Graphical User Interface that allows a user to perform HDFS maintenance tasks and submit new jobs to the cluster. The OceanSync product sits on top of any Hadoop Architecture.

This project aims to be a easy-to-use toolkit of algorithms and utilities for semantic data mining. So far all algorithms are implemented as web services and we provide widgets for their use in the Orange4WS data mining platform.

BioX (pronounce as bio cross) is a system for the management of local and remote (currently supporting RMI, CORBA and SOAP Web Services) components such as files and services (e.g. BLAST). Additionally, the components can be composed to workflows.

SGI allows to define and interpret most of undeterministic 2D shape grammars. It supports real-time subshape detection and labeled rules. GUI is designed for easy manipulation with shape grammars: creation of shapes, rules and generation of designs.

SW for creation of arrows and ellipses shapefiles for visualization of vectors error ellipses etc. Input is structured text file. Output is shapefile (open specification from ESRI). Shapefile is widely used in GIS SW.

Free Organic Chemistry Analysis and Visualisation Tool; Chemical formula editor, calculation of threedimensional molecular structures, high-quality realtime rendering, ...

Graphx - simple plotter for students and pupils of high school. The project source on github.com: https://github.com/Armenian/graphx

Build custom robots in your browser with IncrediBots! Design your robot by drawing shapes, joints, motors, and more! Then, pilot your machine using your own custom key bindings. NOTE: OPEN SOURCE VERSION CAN BE DOWNLOADED FROM "FILES" TAB!

An open-source corpus analysis class library written in C#. GUI of Tenka Text 0.1.3 comes with Wordlister - an advanced, extremely fast graphical wordlist tool and a simple regex concordance tool. Tenka Text - the open-source answer to WordSmith Tool

Apolda is a plugin for the Gate framework (see http://sourceforge.net/projects/gate/) that annotates texts with labels of concepts from an arbitrary OWL-ontology.

<Temporarily Unavailable Online> This project is aiming at completing a library of open codes (mainly based on MATLAB at present) to deal with Dipoles-Cavity Interaction problems. Common methods, including Green's function method and Master Equation method et al, will be applied to the coding. Samples of calculations and standard comparison with publications using the library will be given for demonstration of the usage. Interface to some commonly used software, such as Lumerical FDTD...

The project would include the development of XUL, CSS and Javascript components to assist biologists in sequence manipulations, data mining, data analysis, etc.).