Search Results for "memory" - Page 6
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Showing 200 open source projects for "memory"
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Swift Sequence Alignment Program
GPU-based DNA sequence alignment program using Smith-Waterman
Swift is a DNA sequence alignment program that produces gapped alignment using the Smith-Waterman algorithm. It takes in a query file (FASTA format) and a reference file (FASTA format) as input. It outputs the reference name, read name, gapped alignment, alignment score, alignment start and end positions, and alignment length. I gave a talk on Swift in the GPU Technology Conference 2012. The talk can be accessed at... -
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COS - Parallel Community Detection
COS is a free, opensource parallel k-clique community detection method
Clique percolation method On Steroids (COS) enable k-clique communities to be detected, in parallel, from large-scale networks. Its low memory requirements, together with its linear speedup, make it really efficient, even on dense, highly interconnected networks. COS should be the method of choice for k-clique community detection aiming at very high performance and low resource requirements. -
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Maux is a database monitor system made on php, using apache server and mowes. The program is useful to monitoring Oracle 10G express/standart edition.
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QUASR
Cross-platform NGS processing and analysis pipeline in Python
...Functions include: duplicate removal demultiplexing primer-removal quality-assurance (QA) graphing quality control (QC) consensus-generation minority-variant determination minority-variant graphing The main current version is 6.X, which is written in Python3. 7.X is my rewrite in Java, but is still work in progress. Both are written to be as lightweight as possible so they can run with minimal memory-requirements on a desktop or laptop as well as on a compute cluster. If you have any problems with QUASR, please do contact me at the email address provided in the README. -
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A desktop calculator/scientific calculator. Use as desktop/graphical calculator, web applet, or to show calculator operations: arithmetic, trigonometry, logarithms, complex numbers, memory, statistics. Features four bases, copy and paste, and history
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CRFSharp
CRFSharp is a .NET(C#) implementation of Conditional Random Field
...CRF#'s mainly algorithm is the same as CRF++ written by Taku Kudo. It encodes model parameters by L-BFGS. Moreover, it has many significant improvement than CRF++, such as totally parallel encoding, optimizing memory usage and so on. Currently, when training corpus, compared with CRF++, CRF# can make full use of multi-core CPUs and only uses very low memory, and memory grow is very smoothly and slowly while amount of training corpus, tags increase. with multi-threads process, CRF# is more suitable for large data and tags training than CRF++ now. ... -
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JeeObserver is an open source java monitoring tool used to analyze java applications and servers performance. It can monitor servlets, JSF actions, EJB beans, JVM cpu and memory usage and HTTP sessions. Full documentation at www.jeeobserver.com
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The SNOMP Library
SNOMP (SNOMP is Not OpenMP) is a library for semi-shared memory parall
SNOMP (SNOMP is Not OpenMP) is a library for semi-shared memory parallelization. -
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OpenDRO is an open source project to develop embedded software that runs on digital readouts (DROs) for lathes, mills, and other machine tools.
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Arena is a computer simulation in which programs compete for CPU time and access to main memory. Processes such as the dynamics of punctuated equilibrium, host-parasite co-evolution and density dependent natural selection are amenable to investigation.
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The C/C++ Program Perfometer is an open source tool which enables the programmer to measure the comparative performance of a C/C++ program or of separated pieces of code by one of several desired metrics: e.g., time, memory, or metrics defined by the prog
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HeWIT helps you create and fill out forms. It tells you if you've missed anything or made any mistakes. You can then send the form over email, upload to a web site, or pass it by memory stick to whoever needs it next.
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Global Epidemic Simulator
A platform for modelling influenza-like epidemics and containment
...Building on previous work, this model is spatial and individual-based, using various geographical and demographic data sources to place households at absolute locations, populated with individuals of specific ages who each attend schools or workplaces situated in their vicinity. The significant advance of this project over previous work is the global nature of simulation, the memory and performance requirements of which motivate us towards a multi-core, multi-computer solution. -
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Geo-Spatial Data Viewer (GSDView) is a lightweight viewer for geo-spatial data and products. It is written in python and Qt4 and uses the GDAL library. GSDView is modular and has a simple plug-in architecture.
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WARNING! HPGL source code (NOT the releases, they are still here) now moved to the GitHub at https://github.com/hpgl/hpgl. Please, update your bookmarks!
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Open source library for image fusion (i.e. combining several images while preserving as much information from each image as possible) written in C++. Fast and memory efficient.
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jLlama is a desktop application to monitor servers over SSH. Any figure retrieved from the command line can be polled and graphed in real time. Out of the box, jLlama can graph CPU and Memory usage for Linux and Solaris servers.
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PileLine (Pileup pipeLine) is a toolkit for efficient handling of genomic position (GP) files, produced by next-generation sequencing experiments. It is designed to be memory efficient by performing on-disk operations over sorted GP files.
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BD-1 is a configurable database manager designed to provide efficient search and natural representations of annotated text, storing key-value pairs, triples, or n-tuples of text or binary data. It runs memory-resident or from disk.
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GRANULE is a flashcards program based on Leitner cardfile methodology for learning new words. It features long-term memory training capabilities with scheduling, integrated pictures, sound, and full-screen mode.
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QuickFlash is a C++-based analysis library for data files generated by the Flash hydrodynamics code. It provides high-performance access to large datasets in low memory situations and other restrictive environments.
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This is an IDE for 8051 which can be used to write and simulate assembly language program and find out errors if any. The project implements almost all 8051 functions. It visually shows the content of all register and memory.
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A c++ user-mode Linux driver for the Boltwood Cloud Sensor II (a weather station designed for astronomers).
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FastPval is multiple stage p-value computing software that computes empirical p-values from a large set of permutated/resampled background data.
