Search Results for "python-4suite-xml" - Page 57

Platform for parallel computation in the Amazon cloud, including machine learning ensembles written in R for computational biology and other areas of scientific research. Home to MR-Tandem, a hadoop-enabled fork of X!Tandem peptide search engine.

We here present a novel computer algorithm, called AutoClickChem, capable of performing many click-chemistry reactions in silico. In silico modeling of click-chemistry products may prove useful in rational drug design and drug optimization.

MetaMaster is a Java-based desktop application for defining, managing and manipulating metadata associated with a collection of data files or datasets (both locally and on the network) which are bundled together into "data packages". ANDS-funded

The rp6simul project brings simulation software for the RP6 robot that is manufactured by AREXX engineering. Besides support for all peripherals on the robot base, the simulator also fully supports the m32 extension module, and both can be simulated either independently or simultaneously. Furthermore, a simple 2d environment can easily be created to test lighting, collision, motor speeds and so on. The simulator does not run native AVR files, but instead a thin wrapper is provided so that...

Febrl (Freely Extensible Biomedical Record Linkage) does data standardisation (segmentation and cleaning) and probabilistic record linkage ("fuzzy" matching) of one or more files or data sources which do not share a unique record key or identifier.

xyz2eps.py is an command line utility written in Python programing language which prints the geometry from xyz-file directly to the eps-file format. Originally it was designed to study the problems related to grain boundaries in graphene.

Geo-Spatial Data Viewer (GSDView) is a lightweight viewer for geo-spatial data and products. It is written in python and Qt4 and uses the GDAL library. GSDView is modular and has a simple plug-in architecture.

Application to use MRI brain atlases composed of template images and label images pairs. This application will segment MRI images using labels provided by the atlas. The labels are combined using the voting fusion technique. Please visit our page at http://www.brain-development.org.

Tidal Analysis Program in PYthon (TAPPY) uses the least squares optimization function from scipy to perform a harmonic analysis (calculate amplitude and phases of a set of sine waves) of a hourly time series of water level values.

This project consists of two python based parts, ParaPost and TurboVTK, in order to post process Turbomachinery CFD results with ParaView and VTK.

Footballer and Football Simulation Markup Language and related Software, Football(er) Simulation Markup Language = FerSML

Amalthea is a collection of scripts (mainly Python, glued with Bash scripts) for *nix systems that helps to simultaneously collect information from multiple laboratory balances oriented to gravimetric measurement of plant transpiration.

This project aims to be a easy-to-use toolkit of algorithms and utilities for semantic data mining. So far all algorithms are implemented as web services and we provide widgets for their use in the Orange4WS data mining platform.

PyBact is an open source software written in Python for Bacterial Identification. The software generates simulated data matrix which accurately represents the probabilistic positive/negative results of the tested biochemical test.

Free Organic Chemistry Analysis and Visualisation Tool; Chemical formula editor, calculation of threedimensional molecular structures, high-quality realtime rendering, ...

SGI allows to define and interpret most of undeterministic 2D shape grammars. It supports real-time subshape detection and labeled rules. GUI is designed for easy manipulation with shape grammars: creation of shapes, rules and generation of designs.

Differential-algebraic simulator in python. Process and control systems are modelled w/ bloc diagrams. It allows algebraic loops, has an automatic steady-state computation, detects singular systems, and uses variable time-step transient integration.

ActEdit is an editor for ACT-R-models (http://act-r.psy.cmu.edu/) providing a 3D-Desktop to arrange the production rules. ActEdit can be used to create new models but also to create layouts for rule-production dependencies of already existing models.

PyEPL (Python Experiment-Programming Library) is a library for coding psychology experiments in Python. It supports presentation of both visual and auditory stimuli, and supports both manual (keyboard/joystick) and sound (microphone) input as responses.

An open-source corpus analysis class library written in C#. GUI of Tenka Text 0.1.3 comes with Wordlister - an advanced, extremely fast graphical wordlist tool and a simple regex concordance tool. Tenka Text - the open-source answer to WordSmith Tool

Graph-based Extraction and Summarization - a generic graph-based summarization framework. Basic functionality is provided - third-party modules can be plugged in.

This is a Python program based on the NegEx algorithm that detects the polarity of the clinical evidence in clinical random trials. If you use this code please cite this paper: P. Davis-Desmond and Diego Mollá. Detection of Evidence in Clinical Research Papers (2012). Australasian Workshop On Health Informatics and Knowledge Management (HIKM 2012), Melbourne, Australia.

Modelio-Open is a project hosting a set of open source extensions (SoaML, SysML and UML Testing Profile) for a previous version (1.2) of the Modelio Free tool . Currently, the lastest version (2.x) of Modelio modeling and generation tool is available at http://modelio.org/downloads/download-modelio.html. All extensions are downloadable at http://forge.modelio.org/projects.

A GUI program to create the plasmid database forms for BGME lab. This program presents user with a data entry form for entering plasmid information and automatically converts DNA sequence to protein, aligns it, and creates text output file.