Showing 4339 open source projects for "java"

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  • 1
    Tila

    Tila

    Tile Cache Server

    Tila (TIles on LAn) is a java tile map cache server. Tila will solve performance problems in applications using a map tile server by storing the tiles on your LAN. Tila is still on development but downloable versions are usable. For version 0.1.2 Tila support the folowing caches: - Google Maps - Open Street Map - TMS (OSGeo Tile Map Service) - WMS (OGC Web Map Service) - WMTS (OGC Web Map Tile Service) - Virtual Earth The management web application lets you to easily configure the tile caches.
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  • 2

    BuckTagger

    User-assisted tool for Arabic stem entry to Buckwalter Morpho Analyzer

    Using rules written in a Drools decision table, BuckTagger determines the correct Buckwalter Tag based on morphological properties of the input, automatically extracted or given by the user. At the moment, BuckTagger is not complete; it can only handle input that is: - Uninflected - In lexical form, i.e., no clitics or affixes. - A Perfect or Imperfect Verb - Preferably the first and before-last letters are diacritized/vocalized. The interface is in Arabic. See the README for...
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  • 3
    TreeLiker

    TreeLiker

    TreeLiker is a collection of fast algorithms for working with complex

    TreeLiker is a collection of fast algorithms for working with complex structured data in relational form. The data can, for example, describe large organic molecules such as proteins or groups of individuals such as social networks or predator-prey networks etc. The algorithms included in TreeLiker are unique in that, in principle, they are able to search given sets of relational patterns exhaustively, thus guaranteeing that if some good pattern capturing an important feature of the problem...
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  • 4

    Ontology Testing

    Part of the XD Tools plugin for ontology testing.

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  • 5
    Darwin 2: Java Framework for Evolutionary Computation (genetic algorithm, GA). A true framework with out-of-the-box functionality and extensibility of all classes. Interface-based pattern with dependency-injection to configure components.
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  • 6

    ABC-DynF

    Adaptive Bayesian Classifier with Dynamic Features

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  • 7
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  • 8

    Regra de Sarrus

    Este software obtém a determinante de uma matriz.

    Este software, obtém a determinante de uma matriz, através da regra de sarrus.
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  • 9

    MCloudSim/NovaCloudSim

    a distributed cloud simulator written in Java

    MCloudSim(formerly called NovaCloudSim) is a simulator written in Java for geographically distributed clouds. The software is modified from CloudSim 3.0, which is an open source data center simulator. All functions of CloudSim are reserved, and our newly added files are in the package org.cloudbus.cloudsim.nova. MCloudSim has following characteristics: (1) The overlay protocol can be freely replaced, and we have already ported Pastry, Kadmelia, Chord from PeerSim; (2) A Petri-Net workflow theory based task model is implemented to simulate distributed tasks; (3) A distributed cloud can be easily built by assembling and expanding the basic resource entities provided by the simulator...
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  • 10
    GpxTcxWelder
    Substitutes the missing GPS information in Garmin TCX files when devices lacking a GPS receiver are used to collect training data (Garmin FR 60, heartrate and pedometer only). GpxTcxWelder integrates GPS info from a GPX v1.1 files into TCX files
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  • 11

    AdPreqFr4SL

    Adaptive Prequential Learning Framework

    The AdPreqFr4SL learning framework for Bayesian Network Classifiers is designed to handle the cost / performance trade-off and cope with concept drift. Our strategy for incorporating new data is based on bias management and gradual adaptation. Starting with the simple Naive Bayes, we scale up the complexity by gradually updating attributes and structure. Since updating the structure is a costly task, we use new data to primarily adapt the parameters and only if this is really necessary, do we...
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  • 12
    Ontology Common API Tasks (OntoCAT)
    An open source common API tasks to query existing ontology resources in local files (OWL and OBO) as well as public repositories (Bioportal, OLS) using a standardised, uniform interface.
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  • 13
    BioGenie

    BioGenie

    BioGenie is presented as a complete package for Biological solutions.

    Bioinformatics as an emerging research area spreads out many challenges to both the Bioinformaticists and the Bioinformaticians. BioGenie is presented as a complete package for tackling these challenges. Accommodating all three platforms, that is, a desktop application, a web application and a mobile (android-based) application, BioGenie outperforms all existing softwares engineered to assist heavy and complex computations. The GUI is very well-designed guiding the user technically with ease.
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  • 14
    Ferox

    Ferox

    Ferox - Sequence Alignment with Fuzzy K-mers

    Ferox is a DNA sequence alignment application that uses fuzzy k-mers to quickly and accurately align sets of sequence reads against a reference genome. Ferox can also be used to align whole genomes. The seeding mechanism used by Ferox is highly configurable, allowing custom fuzzy seeds to be created declaratively in an XML configuration file.
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  • 15

    BroadData

    Integrated to system status data based on the HDFS

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  • 16

    Seurat

    A sequence analysis tool for normal/tumor DNA and RNA data.

    THIS IS NO LONGER THE HOME FOR SEURAT. PLEASE GO TO https://sites.google.com/site/seuratsomatic/ --- Seurat is an sequence analysis program for somatic mutation and allelic imbalance discovery in paired tumor and normal genome and transcriptome data.
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  • 17
    Open RVC-CAL to HDL (ORC2HDL) is an Eclipse Plugin which uses the Open RVC-CAL Compiler (ORCC) and the openForge HDL Synthesizer. This plugin gives the ability to generate HDL code from a RVC-CAL model.
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  • 18
    A web-based interface for the Hadoop MapReduce framework that simplifies the process of writing and running MapReduce jobs. Aimed at introducing parallelism concepts in introductory computer science courses.
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  • 19
    CySBGN

    CySBGN

    Cytoscape plug-in that enables handling SBGN maps

    CySBGN adds support to Cytoscape to import, export, visualize and analyse System Biology Graphical Notation (SBGN) maps.
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  • 20
    NMR Spectroscopy tools. See http://connjur.uchc.edu
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  • 21
    Decision Table Preprocessor

    Decision Table Preprocessor

    Ccide is a Decision Table preprocessor.

    Ccide reads a source program, in one of several programming languages, expands all embedded decision tables, and generates the new, expanded source. Ccidew processes C language programs directly. The script, ccide, uses ccidew and m4, to process BASIC, JAVA, CC, C++, BASH, QB, VB, and EX(euphoria), source files containing embedded decision tables. Ccide checks all conditions once and only once, avoiding side effects. Ccide checks tables for conflicts and other errors. Input example: //DECISION_TABLE: // 1 3 2 2 | light == $$ /* 1=red, 2= yellow, 3=green. */ // N - - - | speed == STOPPED // - - Y - | speed == SLOW // - N - Y | speed == FAST // ______|___________________ // X - X - | Stop(); // - - - X | SlowDown(); // - X - - | SpeedUp(); //END_TABLE:
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  • 22
    Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files
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  • 23
    JGridMap

    JGridMap

    Java project for fast and easy visualisation of objects in a grid.

    - Scroll/Zoom - Object dragging - ...
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  • 24
    JOSM plug-in for importing of map data from Cadastral portal of Slovak Republic. Vector data can used for corrections of Openstreetmap for Slovakia.
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  • 25

    Black Hole Cortex

    Sphere surface layers of visual cortex approach maximum info density

    Near the surface (even horizon) of a black hole, there is maximum information density in units of squared plancks (and some translation to qubits). Similarly, our imagination is the set of all possible things we can draw onto our most dense layer of visual cortex in electricity patterns. Bigger layers have more neurons to handle those possibilities. A Black Hole Cortex is a kind of visual cortex that has density of neuron layers similar to density at various radius from a black hole. What we...
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