Showing 304 open source projects for "pdf tool python"

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  • 1
    High-Throughput Tabular Data Processor
    ...The software has been optimized for microarray and deep parallel sequencing data, however it can accept any character delimited tabular data sets. HTDP can also import, process and convert Variant Call Format (VCF) files ver. 4.0, 4.1 and 4.2 (http://samtools.github.io/hts-specs/VCFv4.2.pdf). HTDP provides quick filtering functionality and can process data consisting of single or multiple input files. Citation: Madanecki P, Bałut M, Buckley PG, Ochocka JR, Bartoszewski R, Crossman DK, et al. (2018) High-Throughput Tabular Data Processor – Platform independent graphical tool for processing large data sets. PLoS ONE 13(2): e0192858. https://doi.org/10.1371/journal.pone.0192858
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  • 2

    transitfeed

    Tools for reading, validating & writing transit schedule info in GTFS

    transitfeed helps to make public transit information projects more successful for agencies and other interested parties. It provides a library to help you parse, validate, and generate General Transit Feed Spec (GTFS) feed files. It contains several parts, including TransitFeed (Python package for reading, writing, and validating feeds); Feedvalidator (command line tool that checks a GTFS feed for problems); ScheduleViewer (application for exploring a feed on a map) and more; each with their own set of instructions.
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  • 3
    Acoustic Research Tool (ART)

    Acoustic Research Tool (ART)

    Acoustic Simulation Library for Frequency and Time Domain Simulations.

    ART is a flexible simulation framework for wind instruments. It includes a growing library of modelling elements. So far bore discontinuities, branches, tone holes, cylindrical and conical tubes, Bessel horns and bent tubes are available for frequency domain modelling. In the time domain generic bidirectional propagation elements, scattering elements, fractional delays, convolution with reflection functions and general z-domain networks are available and can be described using MuParserX...
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  • 4
    Pootle Django

    Pootle Django

    Online translation tool

    Pootle is written in Python using the Django framework and therefore can be installed on any web server that supports serving WSGI applications. Key localization file formats are supported, including Gettext PO, XLIFF, Java .properties, PHP arrays and many more supported by the Translate Toolkit. Ensures the best quality localizations by automatically detecting common errors made by translators. Integrates user suggestions, terminology, Translation Memory, Machine Translation, and more. A...
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  • 5

    MethyMer

    Design of specific primer combinations for bisulfite sequencing

    MethyMer is a Python-based tool aimed at selecting specific primers for amplification of complete CpG islands. These regions are difficult in terms of selection appropriate primers because of their low-complexity, polyN-, CG-richness, etc. MethyMer have a flexible scoring system capable of selecting primers in problematic regions (e.g. SpG islands) and includes specificity test (based on bowtie alignment against bisulfite-treated genome).
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  • 6
    Antenna DTV
    Antenna, a free and open-source dvb-t (terrestrial digital tv) tuner for linux desktops. Antenna is a full featured tool to see what's going on in the sky. It enables you to scan, watch and record television, radio and services broadcasted on air.
    Downloads: 1 This Week
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  • 7
    NGSolve is a general purpose Finite Element Library on top of Netgen. With the basic library one can solve heat flow equations, Maxwell equations, and solid mechanical problems. Several add-ons are available for particular application classes. New paper: J. Schöberl: "C++11 Implementation of Finite Elements in NGSolve", ASC Report 30/2014, Institute for Analysis and Scientific Computing, Vienna University of Technology,...
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  • 8
    DimensionalAnalysis

    DimensionalAnalysis

    Performs dimensional analysis from cells in a spreadsheet.

    ...Make sure the names match the contents of the name cells. Use the names in the formulas, not the cell addresses. To use the Dimension Analysis tool, select and copy the cells, then paste them into the tool’s input text box. Requires Python 3 plus SymPy and mpmath packages. http://www.sympy.org http://mpmath.org/
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  • 9
    PyCosmic is a tool to detect and clean single images from the disturbing cosmic ray hits. It was designed and tested specifically for CALIFA and other fiber-fed integral-field spectroscopy dataset. It is written in Python and can be executed from the command line. New release is version v0.5. Updated to be compatible with numpy version 1.12. New release is version v0.4.
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  • 10

    SCons gnuplot tool

    SCons tool to cooperate with gnuplot program

    SCons is a make replacement providing a range of enhanced features such as automated dependency generation and built in compilation cache support. SCons rule sets are Python scripts so as well as the features it provides itself SCons allows you to use the full power of Python to control compilation. This package is an extension (tool) to SCons, which enables "compilation" of gnuplot scripts in SCons-based projects. The intended audience include (but is not limited to) authors/publishers of LaTeX documents, scientific comunity and authors of the projects relying on automatic generation of plots.
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  • 11

    Gene-Environment iNteraction Simulator 2

    A tool able to simulate gene-environment and gene-gene interactions.

    ...GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of individuals to be simulated or on number of non-predisposing genetic/environmental factors to be considered. The GENS2 tool is able to simulate gene-environment and gene-gene interactions. To make the Simulator more intuitive, the input parameters are expressed as standard epidemiological quantities. GENS2 is written in Python language and takes advantage of operators and modules provided by the simuPOP simulation environment. It can be used through a graphical or a command-line interface.
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  • 12
    PBSuite

    PBSuite

    Software for Long-Read Sequencing Data from PacBio

    This currently hosts two projects created and maintained by Adam English. PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads. ----- PBJelly ----- Read The Paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768 PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to...
    Downloads: 1 This Week
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  • 13
    BiBler

    BiBler

    Tool to manage and manipulate BibTeX entries

    BiBler is a software for managing references to scientific articles using BibTeX. BiBler runs with a windows GUI or can be used as a Python library
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  • 14
    Geophar

    Geophar

    Le couteau suisse du prof de maths

    Calculatrice graphique avancée en français, destinée aux professeurs ou aux étudiants du collège et du lycée. Elle permet de faire du calcul approché, de tracer des courbes et des figures géométriques exportables en png, eps, pdf ou svg. Linux, Windows, Mac. Elle contient également un outil pour générer très facilement des tableaux de variations et de signes en LaTeX.
    Downloads: 7 This Week
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  • 15
    S.E.E.R. 2 is a full featured SCADA / Historian / Aggregate Analysis System developed to work as a 'front end' for mod_openopc. Written in pure PHP (HTML 4.01 Transitional), and driven by a web-based user interface for universal deployment.
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  • 16
    Project 2306 IDE Rad MacOS MCU DeveR

    Project 2306 IDE Rad MacOS MCU DeveR

    Electronic design and programming tools suite like Eagle, MpLab

    Currently Only MacOS is Present, PreAlpha means not Ready to use, Application is provided Without Strict Garantee, License not OSI. All others platform Windows, Linux, HaikuOS STILL under TEST, Dummy "Hello world" is provided instead Project2306 IDE : Application pour la programmation de Microcontroleurs et d' Application Electronique Project2306 IDE : for All whom want to Create and Develop on Embed Platform Software as Programming Tools suite and PCB Design Planned...
    Downloads: 1 This Week
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  • 17
    Condor GUI

    Condor GUI

    GUI for managing and working with one or more HTCondor pools.

    Condor GUI is a tool for managing and working with one or more HTCondor pools. It was developed at the Otto von Guericke University Magdeburg, Germany, to support the daily work using HTCondor. Version History: Version 0.9.3: - QDarkStyleSheet is an optional package now Version 0.9.2: - New layout of job file editor - Keyword arguments in job file editor - Linux compatibility
    Downloads: 1 This Week
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  • 18

    Leave A Trace Tools

    Tools for reading the track data of the project "Leave a Trace"

    ...It is installed as a permanent exhibition within the Charité in Berlin, Germany. Please find more Details about LAT here: https://leave-a-trace.charite.de/action This sourceforge project provides python tools to read the raw XML data produced by LAT. The data reading module works with python2 and python3. LAT XML Data can be downloaded here: https://leave-a-trace.charite.de/action/xml_dateien_der_traces/ ## Visualization tool: This project also contains a GUI-based visualization tool, which allows creation of custom vector data (SVG) from the given LAT data. ...
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  • 19
    tranci

    tranci

    Calculate electronic properties of transition metal atoms

    Computational package to study transition metal atoms in surfaces, focusing on the effects of crystal field, spin orbit coupling and electronic interactions. Inputs are written in an user friendly interface, and creates a pdf and graphics with the results.
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  • 20

    PhaseSpace

    Analyse dynamical systems, plot its phase space and critical points.

    Phase Space is born out of the need of a simple yet powerful open source tool to study dynamical systems. PhaseSpace allows you to plot the phase space of the dynamical system you are studying, its critical points and the curves of slope zero and infinite.It can also plot the solutions of the system and it's vector field. To use PhaseSpace you'll need to have Python installed along with Matplotlib and Numpy.
    Downloads: 0 This Week
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  • 21

    forest01

    Automatic delineation of forest borderlines

    Forest01 is a tool for the automatic mapping of forest based on Airborne Laser Scanner data. The forest mapping is performed by means of quantitative criteria typical of forest definitions, namely minimum threshold for the height of trees, canopy cover, forest area size and width.
    Downloads: 0 This Week
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  • 22
    CDMA PN Conflict Tool

    CDMA PN Conflict Tool

    CDMA PN Conflict Tool

    Two (2) dimensional evaluation at PN point of conflict/confusion calculated using a single vector perpendicular to cell antenna face (antenna bore). Output created in pdf file.
    Downloads: 0 This Week
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  • 23
    LGTmate

    LGTmate

    Lateral Gene Transfer utility

    LGTmate is a simple and powerful bioinformatic software tool to identify lateral gene transfer events and contaminants in Eukaryotic proteomes. It is available as a GUI or command-line application, with no dependencies and no installation required.
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  • 24

    Fielddata Mgr

    Land survey field crew data management for .RAW and .JOB file types.

    Fielddata Mgr Overview This is a Python program, which means that one must install the open source freely available Python interpreter and a few required also open source, freely available modules that support the functionality of the program. The program "Fielddata Mgr", is customized for the Rick survey department, in such that it supports up to 9 chiefs, each having their own folder in one location, 2 supervisers, each with a PC on the network, and access to a main...
    Downloads: 0 This Week
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  • 25
    GAVS+

    GAVS+

    An open platform for the research of algorithmic game solving

    ...The software is released under the GNU General Public License (v3). A slightly outdated tutorial (in PDF) is included in the zip file.
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