Search Results for "sql command line" - Page 47
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Showing 2376 open source projects for "sql command line"
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SmithWaterman
Fast local sequence alignment for the masses!
MOVED TO GITHUB: https://github.com/noporpoise/seq-align An implementation of the Smith-Waterman local sequence alignment algorithm. See our sister project global alignment using Needleman-Wunsch: http://sourceforge.net/projects/needlemanwunsch/ -
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aeon-framework
AEON is an Evolutionary Computation framework written in C++.
AEON is an evolutionary framework written in C++, completely object-oriented. AEON is based on a plugin architecture to allow easy integration of new Evolutionary Algorithms (EA) and encodings, and to facilitate sharing of experiments among researchers. Experiments are developed and compiled separately with respect to the main framework. AEON can be easily configured using text files to use different encodings and/or EAs on the same experiment. The framework currently supports... -
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Development and support of OCFA have been discontinued. the code has moved to these github repositories: https://github.com/DNPA/OcfaLib https://github.com/DNPA/OcfaArch https://github.com/DNPA/OcfaJavaLib https://github.com/DNPA/OcfaModules https://github.com/DNPA/OcfaDoc If you are interested in contributing to ongoing work on the creation of a community maintained OCFA inspired computer forensic framework, please join the Mattock/MattockFS community page on...
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Phage_Finder is a heuristic computer program written in PERL that uses BLASTP data, HMM results, and tRNA/tmRNA information to find prophage regions in complete bacterial genome sequences.
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compeo++
compeo++ - Manage Flytec/ Bräuniger Instruments
compeo++ is a light-weight command line tool for GNU/ Linux to interact with flight instruments made by Bräuniger/ Flytec (5020, 5030, 6020, 6030, Competino, Compeo, Competino+, Compeo+). It comes as a portable C++ application with no dependency on any other program (except the GNU/ Linux platform libraries). It aims at being easy to install, easy to run and easy to use. -
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Software for making Clusters of Orthologous Groups (featuring the new EdgeSearch algorithm). Latest ref: Kristensen DM, Kannan L, Coleman MK, Wolf YI, Sorokin A, Koonin EV, Mushegian A. Bioinformatics 2010.
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SOCS
SOCS is a SOLiD read mapper with bisulfite sequencing support.
SOCS performs ungapped alignment of SOLiD (color space) sequencing reads against reference sequences. Modes are available for detecting short sequence-space variants (such as SNPs) and for detecting unlimited numbers of bisulfite-induced nucleotide substitutions for 5mC methylation studies. -
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wt210tocsv
Converts Yokogawa WT210 output to easily chartable CSV format
The Yokogawa WT210 outputs a CSV file through its GPIB-USB interface. The CSV is not easily chartable in Excel/Libreoffice. This will parse the CSV in a way that makes it more easily charted. -
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Fast Alignment Search Tool for di-base reads (color-space; AB SOLiD). A complementary program for the popular Illumina read mappers mrFAST and mrsFAST.
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CRFSharp
CRFSharp is a .NET(C#) implementation of Conditional Random Field
CRFSharp(aka CRF#) is a .NET(C#) implementation of Conditional Random Fields, an machine learning algorithm for learning from labeled sequences of examples. It is widely used in Natural Language Process (NLP) tasks, for example: word breaker, postagging, named entity recognized, query chunking and so on. CRF#'s mainly algorithm is the same as CRF++ written by Taku Kudo. It encodes model parameters by L-BFGS. Moreover, it has many significant improvement than CRF++, such as totally... -
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WordSegment
wordseg project is a word segment module implemented by C#
wordseg project is a word segment module implemented by C#. It is used to segment text into tokens and to label token's attribute according its context and semantic by front-maximum matching and CRF algorithms. The following are some sentences need to be segmented: 张晓晨和付仲恺一起坐在家（西坝河东里社区）里的沙发上看非诚勿扰。 百度公司的名字源于“众里寻他千百度”这诗句。 After above sentences be segmented by wordseg, the result as follows for each sentence: 张晓晨[PER] 和 付仲恺[PER] 一起 坐 在 家 （ 西坝河东里社区[LOC] ） 里 的 沙发[PDT] 上 看 非 诚 勿扰 。... -
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Powersim
Energy Estimation in SystemC.
Power/Energy simulation in SystemC. Powersim is a SystemC class library aimed to the calculation of power and energy consumption of hardware described at system level. To this end C++ operators are monitored and different energy models can be used for each data type. Powersim does not require any change in the application source code. Current version is 0.3.0. -
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Command-line tool to calculate error propagation. Generates the error formulas and applies them to the data.
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Nen
neural network implementation in java
3-layer neural network for regression and classification with sigmoid activation function and command line interface similar to LibSVM. Quick Start: "java -jar nen.jar" -
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jaf_Utils
A C++ library for Statistical Language Processing tasks.
A C++ library for Statistical Language Processing tasks. -
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VERTIS Virtual Scanner
A virtual scanner for 3D models.
A virtual scanner that converts 3D models (in Wavefront .obj format) into pointcloud files (in PCL .pcd format). Useful for simulating robotic input. NOTE: This project has been merged into the project at https://github.com/canderegg/cfg_obj -
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RNAseqR
RNA-seq expression analysis tool
RNAseqR is designed for expression analysis of RNA-seq data, and is best suited for analysis of multiple, unreplicated libraries. It is a C++ coded program currently compiled for Linux systems. With GUI and command line interfaces, it can do log, PPM, and/or RPKM (if lengths provided) transformations, as well as, statistical analysis for differential expression, using the negative binomial cumulative distribution function (CDF) or the R test statistic introduced for EST analysis by Stekel, et al. Output allows for decisions based on CDF probabilities, top R values, or comparison of R values with randomized data. ... -
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aal
The Advanced Algebraic Language.
The Advanced Algebraic Language (AAL) is a very dynamic programming language designed to fill the void that has appeared between mainstream languages and algebra. As a result its main focus is ease of use for math problems. To download AAL check out the source code repository. There are versions available for windows and linux with both 32 and 64 bit native binaries: http://svn.code.sf.net/p/aal-lang/code/trunk/bin/ -
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If you manage phylogenetic data, Bio::NEXUS can make your life easier with a library and ready-made tools to manipulate and visualize NEXUS files (see http://www.molevol.org/nexplorer and http://search.cpan.org/dist/Bio-NEXUS/doc/Tutorial.pod).
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OpenCDSurf
Compute CD cavity accessibility
An open-source software aimed at computing cavity accessibility in cyclodextrin derivatives -
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J-VRPsolver
Solve VRP with 1 warehouse and 1 vehicle type
a simple and effective vehicle routing problem’s solger using metaheuristic algorithms's like Tabu Search and Clark'n Wright. It's specialized in single deposit and singe vehicle's capacity VRP's istances. [mainly for educational purposes] -
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MIDesigner (MID Intelligent Designer) is a utility to design multiplex identifier (MID) primers for use in sequencing projects. Thus, it is similar in intent to Barcrawl.
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FFP (Feature frequency profile) is an alignment free comparison tool for phylogenetic analysis and text comparison. It can be applied to nucleotide sequences, complete genomes, proteomes and even used for text comparison.
