Showing 2578 open source projects for "command-line kill linux"

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  • 1
    DNAA is the DNA analysis package, for analyzing next-generation post-alignment whole genome resequencing data. Specifically, DNAA is able to find structural variation, SNP and indel variants, as well as evaluating the mapping and data quality.
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  • 2
    A collection of software made by Milos Rancic.
    Downloads: 0 This Week
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  • 3
    caplib

    caplib

    Correct, translate and analyze combinatorial library sequencing data

    Originally developped to handle PacBio CCS data for an AAV capsid library. This program will extract, correct, translate and analyze the sequencng data, starting from the CCS fastq file.
    Downloads: 0 This Week
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  • 4

    fqzcomp

    A fastq compression program

    Fqzcomp is a basic fastq compressor, designed primarily for high performance. Despite that it is comparable to bzip2 for compression levels.
    Downloads: 0 This Week
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    DimerRemover

    Remove adapter dimers from NGS data

    This program can be used to count or remove adapter dimers in fastq files. Using a provided adapter sequence, it generates variations of this sequence and stores them in a hash table. The reads can then be directly matched against the hash. It is far more time efficient than doing alignment.
    Downloads: 0 This Week
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  • 6
    msBayes allows complex and flexible phylogeographic inference. More specifically, you can test the simultaneous divergence (TSD) of multiple population (species) pairs. It uses approximate Bayesian computation (ABC) under a hierarchical model.
    Downloads: 0 This Week
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  • 7
    WordNet Database in various SQL format
    Downloads: 27 This Week
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  • 8

    WISP

    Weighted Implementation of Suboptimal Paths (WISP)

    UPDATE: LATEST VERSION AT http://git.durrantlab.com//jdurrant/wisp Allostery can occur by way of subtle cooperation among protein residues (e.g., amino acids) even in the absence of large conformational shifts. Dynamical network analysis has been used to model this cooperation, helping to computationally explain how binding to an allosteric site can impact the behavior of a primary site often many angstroms away. Traditionally, computational efforts have focused on the most optimal path...
    Downloads: 0 This Week
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  • 9
    PseAAC-Builder
    Description: PseAAC-Builder is a cross-platform stand-alone program for generating protein pseudo-amino acid compositions. This is a bioinformatics program. It performs faster than the existing PseAAC server. Reference: [1] Pufeng Du, Shuwang Gu, Yasen Jiao. PseAAC-General: Fast Building Various Modes of General Form of Chou’s Pseudo-Amino Acid Composition for Large-Scale Protein Datasets. International Journal of Molecular Sciences 15 (2014) pp.3495-3506 [2] Pufeng Du, Xin Wang,...
    Downloads: 0 This Week
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  • 10

    Bermuda Text-to-Speech

    This project includes basic NLP and DSP techniques for Text-to-Speech

    See TTS demo at: http://rslp.racai.ro/index.php?page=tts This is an entirely written in JAVA project which includes a set of tools and methods designed to enable Multilingual Text-to-Speech (TTS) synthesis. We currently support English and Romanian but we will soon train more models and make them available for download. If you want to read more about our other NLP and TTS tools check out http://nlptools.racai.ro.
    Downloads: 0 This Week
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  • 11
    LeapInto

    LeapInto

    Simplified interface to Leap Motion designed for art and music apps

    LeapInto provides a simplified interface to the Leap Motion hand sensor input device. Multiple hand recognition is simplified to several stable categories and coordinates are normalised. The interface comes two flavours at present, an open broadcast system using the OSC protocol and a plugin for the Csound audio/music programming language.
    Downloads: 0 This Week
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  • 12

    Galactus

    A neutral hydrogen galaxy modeling and fitting tool

    Galactus is a new astronomical modeling package. The aim is to model and fit datacubes from radio synthesis telescopes. Galactus is the only HI tool which can predict the HI (self-)absorption.
    Downloads: 1 This Week
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  • 13
    Dotcount is a simple cli program to count dots in an image.
    Downloads: 0 This Week
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  • 14
    gpsman

    gpsman

    GPS Manager (GPSMan): a manager of GPS data

    GPS Manager (GPSMan) is a graphical manager of GPS data that makes possible the preparation, inspection and edition of GPS data in a friendly environment. GPSMan can also be used in command mode (with no graphical interface)
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    Downloads: 0 This Week
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  • 15
    Cotovía

    Cotovía

    Text-to-Speech System for Galician and Spanish

    Cotovía is a unit-selection text-to-speech system for Galician and Spanish. Cotovía is distributed under the GPL3.0+ license, but each of the avaliable speaker voices has its own license. The speakers available at sourceforge are free for commercial and non-commercial uses. Another speaker, free for non-commercial uses, is avaliable through external links (see the Blog section). Cotovia has been developed by the University de Vigo and the center 'Ramón Piñeiro' for Research in Humanities,...
    Downloads: 8 This Week
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  • 16
    PyRadMon

    PyRadMon

    Automated reporting of Geiger Muller counter readings to RadMon.org

    This project includes several Python and bash scripts designed to connect Geiger Muller counters to report their results to RadMon.org. Soon the script will also feature local logging, graphing and alerting. Just because the Cold War is "over" does not mean that there is no more threat of a radiological attack. In fact, the U.S. Homeland Security Council lists the "Detonation of a 10 Megaton Improvised Nuclear Device" as "Scenario #1" among the top 15 threats to American security. Or,...
    Downloads: 0 This Week
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  • 17
    Acoustic FDTD Solver (AC2D) -- is a software to simulate acoustic wave propagation in two dimensions based on the finite-difference time-domain (FDTD) method.
    Downloads: 2 This Week
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  • 18
    Opal Toolkit
    Opal is a toolkit for wrapping scientific applications as Web services on Cluster, Grid and Cloud resources with ease. Users may access these software as a service using simple Web service APIs from their custom application and workflow environment.
    Downloads: 0 This Week
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  • 19
    Aiming to create a C library for phylogenetic analysis.
    Downloads: 0 This Week
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  • 20
    Hilbert II - QEDEQ

    Hilbert II - QEDEQ

    proof verifier for mathematical proofs and documentation generator

    In the tradition of Hilbert's program we create a formal correct (checkable by a proof verifier) but readable (like an ordinary LaTeX textbook) mathematical knowledge base which is freely accessible within the internet. Logic and set theory started.
    Downloads: 2 This Week
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  • 21
    DeconSeq
    The DeconSeq tool can be used to automatically detect and efficiently remove sequence contamination from genomic and metagenomic datasets. It is easily configurable and provides a user-friendly interface. More at http://deconseq.sourceforge.net
    Downloads: 0 This Week
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  • 22

    pyUSV

    Ultrasonic Speckle Velocimetry

    Treat output from ultrasound transducer(s) in order to obtain local velocities in a (complex) fluid ; and further analysis.
    Downloads: 0 This Week
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  • 23
    ANGEL-Automatic differentiation Nested Graph Elimination Library is a template library using the Boost Graph Library and the Standard C++ Library; it provides sparse representations of c-graphs their dual line graphs and vertex, edge and face elimina
    Downloads: 0 This Week
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  • 24
    KMLCSV Converter
    Converts Google Earth KML file to a CSV file, and vice versa. This enables you to plot all custom POIs with Google Earth first before transferring them into your Garmin GPS using the POI Loader.
    Downloads: 25 This Week
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  • 25
    jk3d is a java code for 3d interpolation of scattered data. jk3d uses a quality weighted ordinary Kriging method and optional an inverse distances weighting method. It has no graphical user interface and uses ASCII files to define the input.
    Downloads: 0 This Week
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