Showing 14869 open source projects for "gnu/linux"

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  • 1

    hl7apy

    Python library to parse, create and handle HL7 v2 messages.

    We have moved to GitHub: https://github.com/crs4/hl7apy Since version 1.3.3, we no longer distribute hl7apy with SourceForge. Install it using pip (recommended) or download it from GitHub (https://github.com/crs4/hl7apy/releases)
    Downloads: 0 This Week
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  • 2
    Nutrient Finder
    NUTRIENT FINDER is a tool that you can easily find nutrients, create recipes, find energy value and export all datas as Excel file.
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  • 3
    MicroRNAs (miRNAs) are of significance in tuning and buffering gene expression. Despite abundant analysis tools have been developed in the last two decades, plant miRNA identification from next-generation sequencing (NGS) data remains challenging. Here present a user-friendly pure Java-based software package, SRICATs, which enable researchers to perform all steps of plant miRNA analysis based on convolutional neural network methods. SRICATs outperforms currently popular software tools on the...
    Downloads: 0 This Week
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  • 4
    123FASTQ

    123FASTQ

    An intuitive and efficient tool for preprocessing Illumina FASTQ reads

    123FASTQ performs all the pre-processes of Illumina next-generation sequencing reads (FASTQ files) easier than ever.  Download the quick user manual for the latest version: https://dl.adbioinformatics.net/NGSNeeds/myTools/123Fastq_v1.3_Manual.pdf Authors: Milad Eidi, Samaneh Abdolalizadeh, Mohammad Hossein Nassirpour Supervisors: Javad Zahiri, PhD University of California San Diego  Masoud Garshasbi, PhD Tarbiat Modares University, Tehran, Iran If you use 123FASTQ,...
    Downloads: 2 This Week
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  • 5

    GrowthRates

    Calculate growth rates from microplate reader output

    The Bellingham Research Institute (BRI) develops and distributes software that is free of charge to academic and other non-profit organizations. GrowthRates is our software tool that simplifies the analysis of microplate reader output from microbial growth experiments without having to program in Python, R, or MATLAB. It automates the calculation of growth rate parameters, including rates, lag times, maximum population density. Manual calculation of those parameters requires at least 5...
    Downloads: 4 This Week
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  • 6
    Habfuzz

    Habfuzz

    A command-line tool for data-driven fuzzy modelling

    Input 1 - A training dataset (multiple observations) of up to four variables (predictors) against one (response variable) Input 2 - A test dataset (multiple observations) of the same four variables with unknown response variable Output - Calculation of the response variable for each test observation using fuzzy logic or fuzzy rule-based Bayesian algorithms HABFUZZ is a habitat model, which can be used in ecohydraulic modelling applications for the calculation of the instream habitat...
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  • 7
    DeepSee

    DeepSee

    Visualize deep ocean biogeochemical sediment samples in 2D and 3D!

    DeepSee is an interactive workspace for deep ocean scientists to upload sediment core data and map images and see their sampling history displayed across multiple connected views at once! 🦑🦀🐚 🚀 For a live demo, visit: https://www.its.caltech.edu/~datavis/deepsee/ 🌱 To get started, visit our Wiki: https://sourceforge.net/p/deepsee/wiki/Home/ 🧑‍💻 To modify DeepSee for your own project, visit our GitHub repository: https://github.com/orphanlab/DeepSee/ --- Created by Adam Coscia,...
    Downloads: 0 This Week
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  • 8
    ALAMODE

    ALAMODE

    Ab initio simulator for thermal transport and lattice anharmonicity

    ALAMODE is designed for analyzing lattice anharmonicity and lattice thermal conductivity of solids. By using an external DFT package such as VASP and Quantum ESPRESSO, you can extract harmonic and anharmonic force constants straightforwardly with ALAMODE. Using the anharmonic force constants, you can also calculate lattice thermal conductivity from first principles. For more information about ALAMODE, please visit the following webpages: Documentation :...
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    Downloads: 3 This Week
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  • 9

    GECOOR

    Generator of armchair nanotubes with specific bond lengths and angles

    ...(gecoor) Gustavo Domínguez Rodríguez, Gabriel Iván Canto Santana, Jorge Alejandro Tapia Gonzalez, Cesar Alberto Cab Cauich A problem that arises when applying specific strain fields to nanostructures is knowing the atomic coordinate positions that produce the required structural parameters, such as bond lengths and angles. Due to this, a simple-to-use program is implemented within a command-line, for both Linux and MS Windows environments, to generate atomic coordinate files for later use in first-principles simulation codes. The program considers monatomic armchair nanotubes, and the geometric parameters considered are: the length of the bonds perpendicular to the tube axis, the length of the non-perpendicular bonds, and the angle between two non-perpendicular bonds."
    Downloads: 0 This Week
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  • 10

    GeoRegression

    An open source Java geometry library with a focus on 2D/3D space.

    Geometric Regression Library (GeoRegression) is an open source Java geometry library for scientific computing with a focus on 2D/3D space. GeoRegression provides the ability to estimate the closest point/distance between geometric primitives, best-fit shapes, and best fit geometric transform between sets of objects. It is designed for high performance and ease of use. GeoRegression has been release under an LGPL license for both commercial and non-commercial use.
    Downloads: 2 This Week
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  • 11
    SolTrack

    SolTrack

    A free, fast and accurate routine to compute the position of the Sun

    ...SolTrack has been developed by Marc van der Sluys, Paul van Kan and Jurgen Reintjes, of the Lectorate of Sustainable Energy at the HAN University of Applied Sciences in Arnhem, The Netherlands. The code is based on the astronomical Fortran library libTheSky and can be used, modified and distributed under the conditions of version 3 of the GNU Public Licence.
    Downloads: 3 This Week
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  • 12
    VASPKIT
    Basic features: 1. Generate KPOINTS, POTCAR and INCAR for a given POSCAR file; 2. Elastic-constants using stress-strain or energy-strain methods; 3. Equation-of-state fitting; 4. Suggested k-paths for a given crystal structure; 5. Optical adsorption coefficient; 6. Band structure unfolding; 7. Fermi surface; 8. Density-of-states and band-structure; 9. Charge/spin density, Charge density difference; 10. Vacuum level and work function; 11. Wave-function...
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    Downloads: 553 This Week
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  • 13

    Funi

    Python script for calculation of deflection of elastic ropes.

    This software implements the equations of the catenary curves, in adimensional formulation. The theory is applicable only to elastic ropes with uniform section. Any number of hanged masses or hangers may be input. The schema may be imported and exported. The graphics of deflections and tensions are shown with reference to X coordinate, while the graphic of stretches is shown with reference to the curvilinear coordinate. The solution is found by iteration, by mean of Scipy Minimize...
    Downloads: 0 This Week
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  • 14
    QRandgen

    QRandgen

    Генератор случайных чисел

    Случайные числа - это программа генерации случайных чисел и их последовательностей. Как целых, так и вещественных. Так-же программа может выбирать элементы случайным образом из некоторого их количества, имитировать игральные кости (кубики), обеспечить жеребьёвку или экзамен по билетам, определять порядок вызова учеников для ответа.
    Downloads: 1 This Week
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  • 15
    Ellogon is a multi-lingual, cross-platform, general-purpose language engineering environment.
    Downloads: 0 This Week
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  • 16

    CPAT

    RNA coding potential assessment tool

    Using RNA-seq, tens of thousands of novel transcripts and isoforms have been identified (Djebali, et al Nature, 2012 , Carbili et al, Gene & Development, 2011) The discovery of these hidden transcriptome rejuvenate the need of distinguishing coding and noncoding RNA. However, Most previous coding potential prediction methods heavily rely on alignment, either pairwise alignment to search for protein evidence or multiple alignments to calculate phylogenetic conservation score (such as CPC ,...
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    Downloads: 51 This Week
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  • 17
    Math Model

    Math Model

    Code, resources, and templates for mathematical modeling

    Math_Model is a repository collecting resources, code, and algorithm templates for mathematical modeling and competition (e.g. Chinese modeling contests, US undergraduate modeling competitions). It includes LaTeX templates for writing solutions, records of past contest problems and winning solutions, algorithm implementations in MATLAB / M scripts for optimization, intelligent algorithms, numerical methods, and model frameworks. In effect, it is a curated library of modeling code, papers,...
    Downloads: 0 This Week
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  • 18
    RobBX

    RobBX

    RobBX - is a powerfull DIY Arduino constructor based from IQBX

    RobBX - is a first in the world DIY Arduino constructor based from IQBX. Difference from prototype, RobBX has complete conception witch includes: a complete STL 3D-models with OpenSCAD sources; a special schemes and electronics connections; and powerfull Arduino firmware for ESP32 based on WiFi AP Server, connection to it from mobile device give a controller, programmable from IDE (on Blockly). Robb - is a low cost constructor, but it powerful for STEAM education.
    Downloads: 0 This Week
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  • 19
    OsciViewer
    This program aquires data from the oscilloscope LeCroy9400A, Advantest TR4131 and from the PM3311 (own propriatary bus). Dieses Programm liest Daten der Oszilloskope LeCroy9400A, Advantest TR4131 und PM3311 (eigene proprietäre Schnittstelle) aus.
    Downloads: 0 This Week
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  • 20

    adevs

    A simulation library for discrete event and hybrid dynamic systems.

    Adevs is a C++ library for building discrete event and mixed discrete event/continuous simulations. This repository is defunct. We have moved to https://github.com/smiz/adevs
    Downloads: 1 This Week
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  • 21
    WavePacket (Matlab/Octave)

    WavePacket (Matlab/Octave)

    Dynamics of quantum systems, controlled by external fields

    WavePacket is a program package for numerical simulation of quantum-mechanical wavepacket dynamics of distinguishable particles. It can be used to solve single or coupled time-independent or time-dependent (linear) Schrödinger and Liouville-von Neumann-equations, partly also classical or quantum-classical Liouville equations. Optionally accounting for the interaction with external electric fields within the semiclassical dipole approximation, WavePacket can be used to simulate modern...
    Downloads: 0 This Week
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  • 22

    ccgsl

    Use Gnu Scientific Library as if it were writtem in C++.

    The ccgsl provides simple C++ wrappers for the GNU Scientific Library. It uses Java-like shared-pointer classes in place of structs to avoid direct memory allocation/freeing and to work better with the STL. It lets you construct functions for optimisation, root-finding and the like from C++ member functions, making it easier to integrate with existing C++ code. It also provides C++ exceptions.
    Downloads: 0 This Week
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  • 23
    This is an implementation of brazilian portuguese metaphone. Its importance is on strings lookups like names, streets names, words (aspell) etc, made as simple as possible. There is a very large text analysis field to explore with it.
    Downloads: 0 This Week
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  • 24

    Faum

    Fast Autonomous Unsupervised Multidimiensional Classification

    This is the proof-of-concept implementation of the FAUM Clustering method. This implementation was used to perform the published results and is now released in the hope that it will be useful.
    Downloads: 0 This Week
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  • 25
    CollimationCircles

    CollimationCircles

    Collimation Circles, app for easy telescope collimation

    ...Main purpose of this program is to help you with aligning optical elements of your telescope such as secondary mirror, primary mirror, focuser, etc. Collimation Circles is developed with .NET 7 and AvaloniaUI Framework using MVVM architecture patern. Program was tested on Windows 10 and 11, Ununtu Linux 22.04.1 LTS (Wayland) and Raspberry PI OS Bullseye. I'm not able to test it on macOS, but it should work. Suggestions and contributions are welcome!
    Downloads: 8 This Week
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