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geolocate is a front-end java program that works with google maps to provide dynamic maps to users. Combined with the flexibility of XML and the power of javascript, users can see various relationships on their map to draw conclusions.
K-automaton is a new parsing (syntactic analysis) machine isomorphous to language. Implemented in Java. Can generate Java code from grammars described in EBNF.
HyPhy is a comprehensive environment for maximum likelihood statistical analysis of genetic sequence data. It includes a large collection of out of the box analyses, a feature-rich graphical user interface for custom dataanalysis and a scripting languag
FlexCRFs: A Flexible Conditional Random Fields Toolkit for Labeling and Segmenting Sequence Data (this includes a parallel implementation of CRFs called PCRFs to support training CRF models on massively parallel computer systems).
A code for fast multi-dimensional density estimation . Instead of assuming an a-priori metric definition, it calculates a locally adaptive metric for each data point by using, a Shannon Entropy based, binary space partitioning scheme.
A collection of novel phylogenetics algorithms that assists biologists, geneticists, and bioinformaticians in the analysis and interpretation of phylogenetic data.
GEDAS is a software to perform microarray dataanalysis with friendly user interface and convenient data display. Currently some commonly used data clustering algorithms have been implemented in this software.
baobab is an implementation of FPTrees or Frequent Pattern Trees, a pattern recognition/data mining technique. it has innumerable applications in language processing, clickstream analysis, etc.
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W.H.A.T. is an analytic tool for Wikipedia with two main functionalities: an article network and extensive statistics. It contains a visualization of the article networks and a powerful interface to analyze the behavior of authors.
GEOSS (Gene Expression Open Source System), formerly known as GeneX Va, provides a web-based interface for the storage and analysis of Affymetrix GeneChipŽ and other microarray data. It has been developed by engineers at the GeneChip/Microarray Bioinform
HidroSIG is a GIS that supports raster and vectorial maps with modules oriented to the hydrological analysis, time series, remote sensing and more. It has been made 100% in java using VisAD for data visualization and using MySQL to storage all data.
NOTE: Use Fltk_Contour insted this code! FMesh is a simply scientific data visualization tool based on OpenGL. FMesh can generate 2D and 3D graph of contour and color maps for any (x,y,z) scattered data set, many other options are included.
Azureus Plug-In that allocates the ip adresses of the peers to the country and the city they belong to and visualize that data on a world map or in statistics. This product includes GeoLite data created by MaxMind, available from http://www.maxmind.com/.
KML is a knowledge base with support of logical modeling. Advanced model is used to represent knowledge as a set of statements similar to natural language sentences. This project hosts a set of model storage library and server (vrb-ols) and clients.
Ocular is a spreadsheet written entirely in python. Cell contents are evaluated by python after any standard spreadsheet coordinates are parsed. This allows the full Monty from Python to be implemented in a visual environment.
Graph representation of the parapsychological (scientific) models and propositions. The graph will help to visualize the relation between the diferent hypothesis and estimates the level of confidence of a given hypothesis or model.
PyPotrace is a Python programming language binding for Peter Selinger's Potrace raster to vector conversion algorithm. No separate Potrace library or application required!
The Canopy project is an initiative to merge and expand the functionality of Perl-speaks-NONMEM (PsN), Census, Xpose and PopED. The goal is to produce a coherent, inclusive and convenient platform for pharmacometric dataanalysis.
PROMPT is a system for retrieval, analysis, mapping and comparison of proteins. It allows easy mapping of different types of sequence IDs, data retrieval and integration, a multitude of analysis and comparison algorithms and a full-blown easy to use GUI.
MASQOT-GUI is an open-source, platform-independent application for two-channel microarray spot quality control. Included is a set of tools for gridding, segmentation, quantification, multivariate spot quality assessment and data visualization.
Crawl a LiveJournal-based blog hosting for friends data. LiveJournal is a blog hosting engine that allows its users to list others as friends. This tool can download most of the data about friendship relations between users for later processing.