Search Results for "users" - Page 38
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Showing 4768 open source projects for "users"
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Visualization of Protein-Ligand Graphs
Compute protein graphs. Moved to https://github.com/MolBIFFM/PTGLtools
NOTE: Project moved to https://github.com/MolBIFFM/PTGLtools. The Visualization of Protein-Ligand Graphs (VPLG) software package computes and visualizes protein graphs. It works on the super-secondary structure level and uses the atom coordinates from PDB files and the SSE assignments of the DSSP algorithm. VPLG is command line software. If you do not like typing commands, try our PTGL web server: http://ptgl.uni-frankfurt.de/ -
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WavePacket
Dynamics of quantum systems, controlled by external fields
WavePacket is a toolkit for numerical simulation of distinguishable particles. It can solve single or coupled time-independent or time-dependent (linear) Schrödinger and Liouville-von Neumann-equations, as well as classical or quantum-classical Liouville equations. External electric fields can be added within the semiclassical dipole approximation, thus WavePacket can be used to simulate modern experiments involving ultrashort light pulses in photo-induced physics or chemistry, including... -
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DubCen Calculator
DUBCEN IS A FREE & OPEN SOURCE BROWSER BASED CALCULATOR AND CONVERTER
...DubCen name comes from Double+Century. We aim to offer 200 high quality calculators with DubCen. Right now, we are nowhere even close to that. Thus, we need you! We want our users to decide what should the other 150 calculators be. DubCen is built to provide users a memorable calculation experience. -
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The Virtual Math Teams (VMT) Project (vmt.mathforum.org) at the Math Forum enables K-12 math collaborative learning, professional development of educators, & group cognition research. VMT is now integrated with GeoGebra (http://www.geogebra.org/).
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KAnalyze
DNA/RNA Sequence K-mer Toolkit
KAnalyze is a Java toolkit designed to convert DNA and RNA sequences into k-mers. It is both a command line application and an API. -
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Yggdrasill
3D Evolutionary Tree Visualization
Yggdrasill is a 3D phylogenetic tree visualization software based on the Unity 5 engine. Intended for educational and scientific purposes this demonstration release allows to display and explore evolutionary relationships between different terrestrial vertebrate species. Currently available features include procedural tree generation of evolutionary data provided by the Tree of Life (ToL) Web Project (http://tolweb.org/tree/), full three dimensional camera controls as well as a web... -
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What is MedSquare about? Our aim is to create a powerful and flexible modular environment for exploration of medical images, for both medical and scientific purposes.
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BoolCalc
Boolean Expression Evaluator with AND/XOR minimization
This is yet another boolean expression evaluator written in C/C++ with AND/XOR Sum-of-Product outputs. This is useful for projects that require heavy use of arithmetic functions, or multiplexors, where the XOR function dominates the logic expressions. There is also a similar tool with AND/OR/NOT output. -
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ElixirFM
Functional Arabic Morphology
ElixirFM is a high-level implementation of Functional Arabic Morphology. The core of ElixirFM is written in Haskell, while interfaces in Python and Perl support lexicon editing and other interactions. http://github.com/otakar-smrz/elixir-fm -
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tGlue
Glue Libraries for Users as an Environment
A platform-independent environment to glue developed libraries (such as different quantum-chemistry libraries) together for research, education and further development. Git repository: https://gitlab.com/groups/tglue -
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Encode Arabic provides tools for encoding and decoding Arabic in Haskell, Python, Perl, or LaTeX. Interprets the ArabTeX notation to generate original orthography or phonetic transcription. Supports Buckwalter and other romanizations. Converts legacy byte encodings into Unicode. http://github.com/otakar-smrz/encode-arabic
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GEDI (Groundtruthing Environment for Document Images) is a highly configurable document image annotation tool. Its basic structure involves two types of files, an Image file, and a corresponding .XML file in GEDI format. LAMP Univ of MD, College Park, MD
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nexbridge
Makes Celestron mounts controlable over the network
This this program transparently proxies the serial commands supported by the Celestron NexStar hand control over the network, so that the telescope can be controlled over the network. It is recommended to be used with libnexstar or NexStarCtl on the remote end. However it proved to be very useful for exporting all kinds of telescope mounts on the network like Sky-Watcher, Meade etc. Nexbridge can be used directly with software like SkySafari or through ttynet (part of the package) or other... -
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Flamethyst is a flame fractal renderer written in java. It generalizes the classical algorithm in several ways, and support most features of Apophysis .flame files.
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Ogles strives to provide an open source data model for neuroscientific data visualization and analytics. Ogles started out as a planning system for frame based stereotactic neurosurgery. Ogles(1) is discontinued. Release candidate (RC) is Ogles2b. Ogles is accompanied by a simple DICOM reader and NIfTI converting tool (Sdr2).
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Weather Office is a PHP frontend for the database created by open2300 for the WS2300 Weather station ("Matrix"). For a demonstration visit http://wetter.homeunix.net
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ICon (Input Configurator) is a Java-based system for managing input devices and building advanced interaction techniques using a dataflow model. It contains a runtime engine, a rich library of input devices, several processing modules and a visual editor.
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The international SBGN project aims to bring consistency and uniformity to the graphical expression of network diagrams in biology, in the same way that electronic circuit diagrams are standardized in electrical engineering.
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Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutit
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pyhard2, control hardware from python
An object-oriented framework for the development of instrument drivers
pyhard2 is an object-oriented framework to help in the development of instrument drivers. pyhard2 is proposed as an alternative to LabVIEW. Emphasis is given on serial drivers but the framework can be used with any socket. The source also contains the implementation of a PID controller and a setpoint ramp generator. The instrument drivers may further be incorporated in a GUI, using, e.g. PyQt or PySide. Threading is automatically taken care of. Furthermore, generic GUI (called... -
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DualSPHysics
C++/CUDA/OpenMP based Smoothed Particle Hydrodynamics (SPH) Solver
DualSPHysics is based on the Smoothed Particle Hydrodynamics method and can be downloaded from the official website (www.dual.sphysics.org). The code is developed to study free-surface flow phenomena where Eulerian methods can be difficult to apply, such as waves or impact of dam-breaks on off-shore structures. DualSPHysics is a set of C++, CUDA and Java codes based on the SPHysics FORTRAN project (www.sphysics.org) that are designed to deal with real-life engineering problems and are... -
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QAdvancedItemViews
QAdvancedItemViews (QAIV) extends the capabilities of QTableView
QAdvancedItemViews (QAIV) extends the capabilities of the Qt classes QTableView and QSortFilterProxyModel. E.g. QAdvancedTableView supports multicolumn filtering and includes a header view alowing users to create, modify and delete filter. Additional utility classes provide proxy models for conditional decorations, groupings and a lot more. -
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TAPIOCA
support software to enhance the usability of xTAPP by visualization
A tool of input-file preparation and visualization for xTAPP, an application of the first-principle calculation. By graphical user interface (GUI), this application helps xTAPP users for making input files, and visualizes results of wavefunctions, electron densities, and potential profiles into three-dimensional graphics from output files. -
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orbkit (Moved to Github)
A Modular Python Toolbox for Cross-Platform Post-Processing of Quantum
PLEASE NOTE ORBKIT HAS BEEN MOVED TO https://github.com/orbkit/orbkit orbkit is a parallel Python program package for post-processing wave function data extracted from output files of MOLPRO (Molden File Format), TURBOMOLE (AOMix file format), GAMESS-US, PROAIMS/AIMPAC (wfn/wfx file format), and Gaussian (Output File and Formatted Checkpoint File) output files. Futhermore, an interface to cclib, a parser for quantum chemical logfiles, is provided. If you use orbkit in your work,... -
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MULTOVL
Multiple overlaps of genomic regions
The MULTOVL suite of programs finds multiple overlaps among genomic regions. The MULTOVL algorithm can detect several kinds of region overlaps. In addition to the N-fold overlaps you can detect solitary regions which are the input regions that do not overlap with any other region in the input data set, and union overlaps that is the union of the input regions that overlap at least once somewhere. IMPORTANT NOTICE: MULTOVL has been migrated to BitBucket. Please refer to the MULTOVL website...
