Showing 14870 open source projects for "linux-debian"

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  • 1
    Charmol

    Charmol

    Program for molecular graphics

    Charmol is a cross-platform GUI/command-line based program for making high-quality pictures of molecular structures, nowadays working on Linux, MacOS and Windows. As output, it produces POV-Ray rendered images or files in VRML format. Charmol is capable of making pictures containing: - from small- to large-size molecules - more molecules together (different settings possible) - orbitals using molden and fchk files (GTO functions up to 'h' angular momentum supported) - surfaces using gaussian cube files (also color-mapped surfaces according to potential) - schematic representation of vibrations using arrows - user-defined arrows representing vectorial properties - measuring gauges - combinations of these features (more orbitals together, orbitals and arrows together etc.) ...
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  • 2
    PetoronHash2

    PetoronHash2

    PH2 Permutation-based cryptographic post-quantum hash library with duplex construction (C++20)

    PetoronHash2 (PH2) is a standalone ARX-based sponge construction that combines: A 4096-bit internal permutation core A sponge/duplex architecture with explicit capacity separation An extendable-output function (XOF) Memory-hard (HARD) and burn (BURN) modes A structured tagged absorb scheme A parameterized architecture suitable for hashing, KDF, and stress-oriented derivation PH2 is designed as a wide-state cryptographic primitive with explicit domain separation and configurable output...
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  • 3
    MCPower

    MCPower

    MCPower — simple Monte Carlo power analysis for complex models

    MCPower-GUI is a desktop application that provides a graphical interface for the MCPower Monte Carlo power analysis library. It guides users through the full workflow across three tabs: Model setup (formula input with live parsing, CSV data upload with auto-detected variable types, effect size sliders, and correlation editing), Analysis configuration (find power for a given sample size or find the minimum sample size for a target power, with multiple testing correction and scenario...
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  • 4

    Visashot

    A python screenshot script for vintage test & measurement instruments

    Visashot lets you capture screenshots from vintage Test & Measurement equipment like oscilloscopes and spectrum analyzers. Visashot uses the VISA abstraction layer and associated libraries to access instruments over HP-IB (GP-IB), serial, ethernet and other supported interfaces. At the moment 120+ instruments are supported. So far most are from HP/Agilent/Keysight with a few extras from LeCroy. More brands models can be supported, please consider contributing!
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    AV3DNavigator

    AV3DNavigator

    Um simples software de navegação 3D, desenvolvido em Java.

    Um simples software de navegação 3D, desenvolvido em Java.
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  • 6

    ParDRe

    Parallel tool to remove duplicate DNA reads

    ParDRe is a parallel tool to remove duplicate reads. Duplicate reads can be seen as identical or nearly identical sequences with some mismatches. This tool will let the users to avoid the analysis of not necessary reads, reducing the time of subsequent procedures with the dataset (e.g., assemblies, mappings, etc.). The tool is implemented with MPI in order to exploit the parallel capabilities of multicore clusters. It is faster than multithreaded counterparts (end of 2015) for the same...
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  • 7

    Tokenized Text Aligner

    Aligns tokens in two versions of a text with differing tokenization.

    This tool performs token-by-token alignment of two versions of a text with differing tokenization by interpreting the results of a file diff (https://docs.python.org/3/library/difflib.html). It is intended for use in the preparation of annotated linguistic corpora, where differences in tokenization may arise (i) following corrections or modifications to the source text or (ii) through the creation of different layers of annotation (part-of-speech, treebank) requiring different tokenization....
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  • 8
    nars2000

    nars2000

    NARS2000: An Experimental APL Interpreter

    APL is an arrary-oriented language initially conceived in the 1960s by Kenneth E. Iverson, IBM Fellow and 1979 ACM Turing Award recipient. It is ideally suited to computer programming because it subsumes the tedious aspects of the job allowing the programmer to concentrate on the heart of the project. NARS2000 is a Free Open Source implementation of APL. For more details on this project, visit the NARS2000.org website.
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  • 9
    stkpp

    stkpp

    C++ Statistical ToolKit

    STK++ (http://www.stkpp.org) is a versatile, fast, reliable and elegant collection of C++ classes for statistics, clustering, linear algebra, arrays (with an Eigen-like API), regression, dimension reduction, etc. Some functionalities provided by the library are available in the R environment as R functions (http://cran.at.r-project.org/web/packages/rtkore/index.html). At a convenience, we propose the source packages on sourceforge. The library offers a dense set of (mostly) template...
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  • 10
    Frevo

    Frevo

    Frevo is probably the simplest tool for evolutionary design

    FREVO is an open-source framework developed in Java to help engineers and scientists in evolutionary design or optimization tasks. The major feature of FREVO is the componentwise decomposition and separation of the key building blocks for each optimization tasks. We identify these as the problem definition, solution representation and the optimization method. This structure enables the components to be designed separately allowing the user to easily swap and evaluate different configurations...
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  • 11
    An innovative Open Source CEP (Complex Event Processing) engine. It implements the event stream processing as a library embeddable in C++ and Perl. You can think of the Complex Event Processing engine as an in-memory database driven by triggers, or a data-flow machine, or a spreadsheet on steroids (and without the GUI part).
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  • 12
    Leaklog
    Leaklog is a leakage control system based on Regulation (EC) No 842/2006. It logs findings and parameters of leakage checks, shows a history of the development of parameters, compares them with nominal ones and calculates the percentage of leakage.
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  • 13
    SimThyr

    SimThyr

    A simulation program for thyroid homeostasis.

    SimThyr is a continuous simulation program for the human pituitary-thyroid feedback control system. Applications of this program cover research, including development of hypotheses, and education of students in biology and medicine, nurses and patients.
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  • 14
    Java multiprecision calculator

    Java multiprecision calculator

    Multiprecision calculator

    Multipresicion calculator, based on Bigdecimal Java class . It has a library (BigMath) that makes calculations with Bigdecimal. It has also an expression parser to parse the user input. It allows you to store user defined variables and functions . You can operate with them to be used for calculations or for creating new functions with composition. With the new version, you can also calculate the derivative of a function. JDK-17 compatibility You can find more about it at this web...
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  • 15
    PQS

    PQS

    Petoron Quantum Standard (PQS)

    Petoron Quantum Standard (PQS) v1.2 A fully custom, offline encryption standard - built entirely from scratch. PQS v1.2 is a minimalistic, self-contained encryption engine for secure file protection, with zero reliance on external cryptographic libraries. PBKDF2-HMAC-SHA256 (200k iterations, adjustable) for password hardening. Key separation via BLAKE2s - independent keys for encryption and MAC. BLAKE2s-MAC authentication - 16-byte tag, any modification = instant...
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  • 16
    MAF

    MAF

    Bash Framework to combine many preprocessing and alignment tools

    DNA and RNA nucleotide sequences are an ubiquitous element of all biological cells and are serving on one hand as a comprehensive library of capabilities for the cells and on the other as an impressive regulatory system to control cellular function. The presented multi-alignment framework (MAF) should give researchers a simple sequence alignment platform as a functional template, flexible enough to adjust all steps but also comprehensive enough to join many different tools and custom...
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  • 17
    OpenGXT - Geopatial Analysis Tools

    OpenGXT - Geopatial Analysis Tools

    Spatial Statistics Libraries & Tools for GeoTools, GeoServer, uDig

    The goal of this project is to provide a spatial statistics tools for Geotools, Geoserver WPS, uDig Statistics Toolbox. #. Online Documentation - http://opengxt.mangosystem.com/ #. GeoTools -Download gt-process-spatialstatistics-xx.x.jar file #. GeoServer - Download GeoServer-Extension-OpenGxT-x.xx.x.zip - Unzip and copy two files to the WEB-INF/lib directory of the GeoServer installation. - Restart GeoServer #. uDig 2.0.x Plugin Installation - Name: Spatial...
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  • 18

    eval: command line calculator

    Evaluate math expressions from command line or in interactive session.

    Small (156 kB) command line calculator. Evaluate an expression directly from command line with eval <expr> command Example: c:\> eval 2+3 5 or in an interactive session. In a session, results may be assigned to unlimited number of variables and used in later calculations. Example: > x := 6+7 13.0000 >y := x*2 26.0000 Large number of elementary, special, trigonometric, hyperbolic and probability distribution functions are available. Number of decimal digits is defined by...
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  • 19
    A header file (cexcept.h) that provides Try/Throw/Catch macros similar to those available in C++ for error handling.
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  • 20
    PetoronHash-System

    PetoronHash-System

    PHASH | post-quantum XOF hashing algorithm | C++20

    PHASH is a self-contained, dependency-free, post-quantum XOF hashing algorithm implemented in modern C++20. This release delivers the first fully stable production implementation of the PetoronHash-System — a 1600-bit sponge-based hash function with domain separation, extendable output, and deterministic behavior. Key Features No external dependencies — pure C++20 implementation. Extendable Output (XOF) — supports arbitrary output length (256–8192+ bits). Post-quantum oriented design...
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  • 21
    Tempico software

    Tempico software

    Software to control and analyze Tausand Tempico timing data

    Tempico Software is designed to control the Tausand Tempico TP1004 and TP1204 devices, a time-to-digital converter that captures temporal differences from a common start signal across multiple channels. The software generates histograms from captured data, supports lifetime measurements via single-photon correlation (SPC), and displays real-time graphs with adjustable fitting options. It includes a 'Counts Estimation' panel to estimate count rates per channel over time, and a 'Time Stamping'...
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  • 22
    GNNPCSAFT Web App

    GNNPCSAFT Web App

    Smart Thermodynamic Modeling with Graph Neural Networks

    The GNNPCSAFT Web App is an implementation of our project that focuses on using Graph Neural Networks (GNN) to estimate the pure-component parameters of the Equation of State PC-SAFT. We developed this app so the scientific community can access the model's results easily. In this app, the estimated pure-component parameters can be used to calculate thermodynamic properties and compare them with experimental data from the ThermoML Archive. More info on github repository.
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  • 23
    Gwyscope

    Gwyscope

    Open hardware SPM controller with advanced sampling support.

    Gwyscope is a low cost, open hardware, Digital Signal Processor (DSP) suitable for Scanning Probe Microscopy measurements, focusing on demonstrating the concept of adaptive scanning, general XYZ data acquisition and statistical data processing on the controller level. More details can be found in: M. Valtr et al., Scanning Probe Microscopy controller with advanced sampling support, HardwareX, Volume 15, e00451 https://www.hardware-x.com/article/S2468-0672(23)00058-5/fulltext It...
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  • 24
    G-Code Transformation Utility

    G-Code Transformation Utility

    Transformation utility to rotate coordinates in G-Code files

    Coordinate rotation is useful when making PCB with 2+ layers. Based on a reference points (which are included in PCB production files during DIY manufacture) it is possible to layout different PCB layers during drilling, UV exposing, gluing &final cut. Each time PCB was dismounted from a CNC and mounted again, it will have some angle of rotation over a zero point (X=0, Y=0). Manual measurement of this rotation angle is performed with help of laser module mounted on the same CNC. For each...
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  • 25
    Baya - SoC Integration Platform

    Baya - SoC Integration Platform

    Best in class SoC Integration Platform, IP-XACT, Verilog VHDL, UPF

    1. Comes with 200+ high level Tcl commands around SoC platform assembly 2. Easy to start - use the verilog2baya tool to convert existing SoC/SS into Baya 3. Adhoc and Interface based connections 4. Autoconnections 5. Rule based connections between component ports 6. A variety of SoC integration Methodologies 6.a. XLS/CSV Based connections 6.b. Port-to-Port Adhoc connections 6.c. IP-XACT and System Verilog Interface based connections 6.d. ... 7. Maintains a connectivity...
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