Showing 2215 open source projects for "raspberry-gpio-python"

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  • 1
    MicrobeGPS

    MicrobeGPS

    The Explorative Taxonomic Profiling Tool for Metagenomic Data

    MicrobeGPS is a bioinformatics tool for the analysis of metagenomic sequencing data. The goal is to profile the composition of metagenomic communities as accurately as possible and present the results to the user in a convenient manner. One main focus is reliability: the tool calculates quality metrics for the estimated candidates and allows the user to identify false candidates easily.
    Downloads: 0 This Week
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  • 2

    GASiC

    Genome Abundance Similarity Correction

    One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by...
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  • 3
    polypy
    **(9 march 2016) this project is continued on github : http://jaapkroe.github.io/polypy ** Python script to analyze (shortest-path) rings in structures read from xyz-files. It can be useful for example to identify defects in crystal structures or molecules.
    Downloads: 0 This Week
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  • 4
    PyMod

    PyMod

    (OBSOLETE) PyMOL Plugin for Homology Modeling of Protein Structures

    This is the UNOFFICIAL mirror to PyMod. Since the release of PyMod2.0, this repository will no longer be maintained.
    Downloads: 3 This Week
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  • 5

    pipasic

    pipasic: Protein Abundance Correction in Metaproteomic Data

    Metaproteomic analysis allows studying the interplay of organisms or functional groups and has become increasingly popular also for diagnostic purposes. However, difficulties arise due to the high sequence similarity between related organisms. Further, the state of conservation of proteins between species can be correlated with their expression level which can lead to significant bias in results and interpretation. These challenges are similar but not identical to the challenges arising in...
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  • 6
    Alfanous

    Alfanous

    Quran Search Engine

    Alfanous (The Lantern - الفانوس ) is an Arabic search engine API provide the simple and advanced search in the Holy Quran , more features and many interfaces...
    Downloads: 0 This Week
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  • 7

    fitGCP

    Fitting genome coverage distributions with mixture models

    Genome coverage, the number of sequencing reads mapped to a position in a genome, is an insightful indicator of irregularities within sequencing experiments. While the average genome coverage is frequently used within algorithms in computational genomics, the complete information available in coverage profiles (i.e. histograms over all coverages) is currently not exploited to its full extent. Thus, biases such as fragmented or erroneous reference genomes often remain unaccounted for....
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  • 8
    *WARNING* gtburst moved to github (https://github.com/giacomov/gtburst). ########################################## gtBurst is a tool to download data, analyze and simulate Gamma-ray Bursts and Solar Flares as observed by the NASA Fermi satellite.
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  • 9
    ADOMA
    ADOMA stands for: Alternative Display Of Multiple Alignment. ADOMA can create four different displays of a multiple sequence alignment: a ClustalW alignment in HTML format, a simplified ClustalW alignment in HTML and/or txt format and a colored ClustalW alignment in HTML format. For examples of these outputfiles check the screenshots. ADOMA uses ClustalW to create the multiple alignment from DNA or protein sequences and displays them slightly different than the normal output of ClustalW....
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  • 10

    SCaVis

    Scientific Computation and Visualization Environment

    SCaVis is an environment for scientific computation, data analysis and data visualization for scientists, engineers and students. The program is fully multiplatform (100% Java) and integrated with Java and a number of scripting languages: Jython (Python), Groovy, JRuby, BeanShell. SCaVis can be used to plot functions and data in 2D and 3D, perform statistical tests, data mining, numeric computations, function minimization, linear algebra, solving systems of linear and differential equations. Linear, non-linear and symbolic regression are also available. Elements of symbolic computations using Octave/Matlab scripting are supported. ...
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  • 11

    KEMP

    A FDTD solver for electromagnetic wave simulations on a GPU cluster

    ...The FDTD (Finite-Difference Time-Domain) method is a popular numerical method for electromagnetic field simulations. KEMP enables hardware accelerations suitable for multi-GPU, multi-core CPU and GPU cluster. KEMP also provide easy configuration by using Python scripting language.
    Downloads: 0 This Week
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  • 12
    xmipp

    xmipp

    Image processing suite for Electron Microscopy

    XMIPP is an image processing suite for 3D-reconstruction of biological specimens from transmission electron microscopy data. NOTE that stable releases (including binaries) are longer stored at Sourceforge, but are available at http://xmipp.cnb.csic.es
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  • 13
    ccwatcher

    ccwatcher

    A computational chemistry monitoring, parsing and plotting application

    ccwatcher monitors the progress of computational chemistry calculations during runtime. It has both a GUI and a "Command Line Interface" to which it parses important output and plots SCF energies.
    Downloads: 1 This Week
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  • 14

    wmtsa-python

    Discrete wavelet methods for time series analysis using python

    ...The code uses a mix of python and cython for improved performance. The code reflects my needs and preferences, but contributions from others are welcome. The code has to some extent been tested, but bugs are to be expected.
    Downloads: 0 This Week
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  • 15
    Multiplication Station

    Multiplication Station

    Grid based multiplication, add, sub including (-)ve #s

    Multiplication Station will teach your child to add, subtract and multiply. All parameters configurable, like grid size and number ranges fonts and colors. Countdown timer keeps attention focused. High scores too.
    Downloads: 0 This Week
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  • 16
    CONTIGuator
    CONTIGuator is a Python script for Linux environments whose purpose is to speed-up the bacterial genome assembly process and to obtain a first insight of the genome structure using the well-known artemis comparison tool (ACT).
    Downloads: 4 This Week
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  • 17
    BlueSky Open Air Traffic Simulator

    BlueSky Open Air Traffic Simulator

    BlueSky Open Air Traffic sim, (Windows/Linux/Mac, Python 2.x based)

    BlueSky is an Open Air Traffic Simulation for research purposes. It includes only open, license free data for navigation and aircraft performance but is also compatible with BADA 3. Can be used for ATC research or any other aviation or air transport related simulation studies. Is also able to visualize ADS-B traffic. BlueSky commands, and thus the scenario files, are compatible with the TMX simulator in use by NLR and NASA. BlueSky is originally developed, and still moderated, by prof....
    Downloads: 5 This Week
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  • 18
    psignifit is a toolbox to fit psychometric functions and test hypotheses on psychometric data. This is version 3 which will now predominantly support python.
    Downloads: 0 This Week
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  • 19
    sfunctioner is a GUI wizard written in PyQt for creating Matlab Simulink sfunctions quickly and efficiently. It helps creating a fully functional sfunction within a few minutes.
    Downloads: 0 This Week
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  • 20
    PhyloTrack

    PhyloTrack

    PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples

    PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting...
    Downloads: 0 This Week
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  • 21

    PyBrella

    Python script to automate umbrella sampling with AMBER

    PyBrella is a script designed to automate the umbrella sampling process, using the AMBER molecular dynamics package.
    Downloads: 0 This Week
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  • 22
    Kankin Linux

    Kankin Linux

    Distribuição baseada no Funtoo Linux para arquitetura ARM

    .... :)))))))) * Primeira distribuição Linux Brasileira com releases para hardware opensource com processadores ARM * Suporte a redes DTN (Delay-Tolerant Networking) * Ferramentas da distribuição de software "Interplanetary Overlay Network" (ION-DNT - NASA) * Servidor X com suporte nativo a LXDE Manual de instalação para Raspberry Pi: http://a31.com.br/kankin-raspberrypi Manual de instalação para Cubieboard A20: http://a31.com.br/kankin-cubieboard-a20 Vídeo: http://youtu.be/CJ-P8O4 - Apoio da Fundação Raspberry Pi: http://a31.com.br/apoio-raspberrypi - Apoio do Funtoo Linux: http://a31.com.br/apoio-funtoo
    Downloads: 0 This Week
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  • 23

    iMir

    Integrated pipeline for HT miRNA-Seq data analysis

    Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular...
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  • 24
    mpvscada

    mpvscada

    Another HMI/SCADA set of tools written in C++(Qt) with python bindings

    HMI/SCADA software. Support Linux, Windows (cross operation) Source library for writing own control applications with Qt in C++/Python.
    Downloads: 0 This Week
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  • 25

    openSEQ

    NGS compute distro proloaded with pipeline analysis software

    ...Software included (location - name): path - biobambam path - bwa path - bowtie2 path - bowtie path - cufflinks path - bcftools path - tophat path - scalpel path - samtools path - sra-toolkit path - bamtools path - delly path - delly-parallel path - picard-tools path - fastahack path - twoBitToFa ~/prog/java/ - mutect ~/prog/python/ - platypus ~/prog/java/ - gatk
    Downloads: 0 This Week
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