Search Results for "ofn-extract-objects.py" - Page 3
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Showing 118 open source projects for "ofn-extract-objects.py"
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This space is not maintained anymore. If you want to get the latest updates on fpocket refer to https://github.com/Discngine/fpocket. Fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level.
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caplib
Correct, translate and analyze combinatorial library sequencing data
Originally developped to handle PacBio CCS data for an AAV capsid library. This program will extract, correct, translate and analyze the sequencng data, starting from the CCS fastq file. -
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TextualModelGenerator
Generator for textual models by applying different techniques
This is a project created and supported by: Angel Castellanos Juan Cigarrán Recuero Ana García Serrano This projects allows the modelling of textual contents by applying different techniques: TF-IDF KLD Mutual Information Chi^2 With this application the users can be able to extract the most representative terminology of a textual collection. The application is Java-based, allowing their execution in several platforms and operative systems (Windows, Linux, MacOS). -
No-Nonsense Code-to-Cloud Security for Devs | AikidoAikido provides a unified security platform for developers, combining 12 powerful scans like SAST, DAST, and CSPM. AI-driven AutoFix and AutoTriage streamline vulnerability management, while runtime protection blocks attacks.
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CAPLET
GDS visualization and parallelized capacitance extraction
Project CAPLET is a capacitance extraction toolkit that extract capacitance at field-solver accuracy. CAPLET can directly handle GDS2 layout files into capacitance matrices in both GUI and command line interfaces. The internal extraction algorithm is specialized for VLSI interconnect structures but not exclusively, as long as the structure is of Manhattan geometry and embedded in a uniform dielectric material. -
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tsv-Tools
bunch of tools to parse TSV files.
I want to write base libraries to easily parse TSV files. Most of thinks can be done with unix cmd lines, but here I will also deal with headed files and try to managed some metadata. Else goals are reorder, sort, filter, extract, merge, ... I'll also try to develop class to have a general API, regardless the language. It's a try ! You're wellcome to comment or join. -
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Anteater
Annotation Tool to Extract Endangered Animals from Text Resources
The goal of this project is the extraction the information listed below from texts downloaded from the Federal Register (https://www.federalregister.gov). The texts are mainly applications for permits, notices about given permits, etc. This software tool is developed by the Max Planck Institute for the History of Science (http://www.mpiwg-berlin.mpg.de) in collaboration with Dirk Wintergrün and Etienne Benson. -
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SBEToolbox
Systems Biology and Evolution Toolbox (SBEToolbox).
SBEToolbox (Systems Biology and Evolution Toolbox) is being developed in MATLAB as a menu-driven UI software to determine various statistics of the biological network. Some of its features include (but not limited to) algorithms to create random networks (small-world, ring lattice etc..), deduce clusters in the network (MCL, mCode, clusterOne) etc... ******************************************************************************************************************************** PROJECT... -
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CRIS-IE-Smoking
GATE based app to extract patient smoking status from free text
This application was developed by the NIHR Biomedical Research Centre at the Institute of Psychiatry and South London and Maudsley NHS Foundation Trust, in collaboration with the University of Sheffield. Its purpose is to identify the smoking status of a individual, based on text evidence in clinical notes. Currently, it classifies patients as 'current', 'past' or 'never'. It runs on the GATE infrastructure, available at http://gate.ac.uk/. Please contact richard.g.jackson@slam.nhs.uk for... -
Photo and Video Editing APIs and SDKsUnlock Picsart's full editing suite by embedding our Editor SDK directly into your platform. Offer your users the power of a full design suite without leaving your site.
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A resource for political accountability; a compilation of statistics and information on Canadian Members of Parliament, and possibly other levels of government. The project includes the website code, as well as the tools used to extract the informati
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AgED
AgED - Analysis given Experimental Data
AgED performs automatic feature extraction from your image data and allows for their visualization and management. AgED relies on Elliptic Fourier Transcriptors to extract features from large quantities of image data. These features can then be visualized and you can evaluate them in a statistical manner. This type of analysis is particularly worthwile in the assessment of biological experiments. Elliptic Fourier Descriptors have been applied in a large range of applications in biology... -
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DReAMSim
Dynamic Re-configurable Autonomous Many-task Simulator
DReAMSim provides a simple simulation framework for modeling homogeneous and/or heterogeneous (re)-configurable processing elements in a large-scale distributed environment. In particular, DReAMSim enables users to model task scheduling techniques at a preliminary design stage in order to investigate their performance potential. The simulation framework makes it easy to extract various performance and resource utilization related statistics to study the behavior of different task scheduling... -
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NAS-KONV
NAS-KONV delivers XSLT scripts to extract data out of ALKIS NAS files
NAS-KONV is a collection of examples, how informations could be extracted out of NAS files, using XSLT scripts. NAS is a GML3 exchange format, used by the german cadastral agencies for ALKIS®. -
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iLastic
Query, integrate and manipulate data using natural languages.
iLastic is an open-source framework to query, integrate and manipulate any type of data in English. Extract, transform and merge information from the web, databases, files or any other data repository using a language you already know... English -
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metaProt
Pipeline to analyze coding regions in metagenomic projects
metaProt is a python pipeline to analyze and extract data from protein sequences found in metagenomic projects. It integrates several existing tools (HMMer, Pepstats, Blast...) to be used against custom databases. Please, read the README.txt file to find more about this. -
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The project wms2GO is designed to build a local executable WebGIS application out of pre-defined or manual selected WMS (OGC WebMapServices) of free map extract. Thus it is possible to use this application on a mobile device (e.g. a laptop) without any network access. Manuals for Installation and Setup have been added to the SVN. You can find them here: http://wms2go.svn.sourceforge.net/viewvc/wms2go/wms2go-help-1.0/ At the moment, they are only available in german, but this may change...
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This is a library to extract raw unicode text from any written documents (office documents such as PDF, Word, OpenOffice, ...). It should be useful to developpers of search engine, text processing, corpus analysis, ....
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SEMANTIXS is a semantic information extraction system that can extract, represent and visualize domain-specific information from free-text in the form of complex (and simple) relationships. Refer - http://www.cs.iastate.edu/~semantix/ for more info.
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Echoproc is a piece of scientific analysis software used to extract physical ice sheet characteristics from radio echograms from experiments like the Center for the Remote sensing of ice sheets (https://www.cresis.ku.edu/)
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ContactAngle is a simple and easy-to-use program to extract contact angles from videos of liquid droplets on a surface.
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Image analysis program that extract the movements of the bacteria from digitised movies and data processing associated.
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A simple and still alpha Python script to extract features out of an OpenStreetMap (OSM) file into basic Keyhole markup language (KML)
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H-mito is a mitochondrial DNA haplogroup prediction tool based on the phylogenetic tree http://www.phylotree.org/. Ancillary scripts: mitoP.py to extract mutation lists and clustal-2-fasta.zip to join, align through clustalw and convert data.
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Foad is an open source software which receive an EKG Signal from scanner, WFDB database or heart sensors. Finding patient disease started by taking Fourier transform (FFT) from input signal and extract a single cycle. Based on some heuristic algorithm the most important feature like P , Q , R , S , T captured and feed to trained neural network. and so the final decision made by CNN library. As mentioned before this software also capable do some image processing on scanned paper to lower...
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PHPXref is a developers tool, written in Perl, that will cross reference and extract inline documentation from a collection of PHP scripts. It generates simple HTML output suitable for browsing offline.
