Search Results for "linux cli minimal" - Page 3
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Showing 112 open source projects for "linux cli minimal"
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The project supports the Welsh Language Technology domain with a set of NLP tools that drive innovation and advance the development of sophisticated textual analysis solutions. The WNLT project delivers four core NLP modules; a) Word Segmentation for separating text into words b) Sentence Boundary Disambiguation for finding sentence boundaries c) Part of Speech Tagger for determining the part of speech of each word d) Morphological Analyser for identifying the root form (lemma) of words....
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ViralFusionSeq [VFS]
Accurately discover viral integration events and fusion transcripts
VFS was fullly tested under Ubuntu/Debian system. ** Announcement 1**: VFS is superior to Virus-Clip. https://sourceforge.net/projects/viralfusionseq/files/VFS.vs.Virus-Clip.pdf/download As of 2016, VFS is the only viral integration tool available at NIH HPC system. https://hpc.nih.gov/apps/ViralFusionSeq/ ViralFusionSeq (VFS) is a versatile high-throughput sequencing (HTS) tool for discovering viral integration events and reconstruct fusion transcripts at single-base... -
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MSTgold
Estimate minimum spanning trees with statistical bootstrap support
...MSTgold accepts single-character data that are nucleotides, amino acids, binary characters, or SNPs; integers that represent, for instance, the lengths of VNTRs or microsatellites; and distance matrices. The MSTgold package includes Mac OS X, Linux, and Windows executables of the MSTgold program, a detailed Manual, example data and results, and executables of the program Fasta2MSTG which converts Fasta sequence files to the MSTgold input format. -
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NICOS
Client/Server based experiment and instrument control system
Client/Server based experiment and instrument control system -
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State Controller Library
A C++ framework that implements generalised finite state machines.
The State Controller Library is a generic platform-independent C++ framework that allows finite state machines and multi-action planning generalisations thereof to be realised. The structure and implementation of this library focuses on the application of finite state machines to real-time control loops, but can be reasonably adapted for virtually any other application, even completely unrelated to control systems. An emphasis has been placed on having very low overhead so as not to hurt... -
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KAnalyze
DNA/RNA Sequence K-mer Toolkit
KAnalyze is a Java toolkit designed to convert DNA and RNA sequences into k-mers. It is both a command line application and an API. -
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Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms.
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COFILOS
A Development Framework for Coldfire
Contains a framework for Coldfire MCUs like 52254. The framework supports a Command Line Interface (CLI) that may work from Serial port, USB or ENET. The framework uses Processor Expert and IDE requirement is MCU Eclipse 10.4 from Freescale. Includes the FunkOS Realtime Operating System by Funkenstein Software Consulting, available at http://funkos.sourceforge.net Mainly it is a support package for the development board Perseus, but I have ported also the RTOS to MCF52233DEMO... -
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BTA_lib
Simple CLI client for 6-meter telescope BTA
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XMLPipeDB is a suite of tools for building relational databases from XML sources with minimal manual processing of the data. While the applicability is general, our motivation was to facilitate the management of biological data from different sources.
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Protein Contact Matrix Generator
Command line application to generate contact matrix from proteins (3D)
A protein contact matrix is 2D representation of the distances between amino acid residues in a 3D protein structure. Protein Contact Map Generator (PCMGen) is a command line tool which takes protein 3D structures (PDB format files) as input and computes contact distances between two chains (from single or two different proteins). These matrix files can be further visualised as Contact Maps using other visualization tools/ programs (like R-heatmaps). Contact Maps can be used to understand... -
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NexusDataLink
Connect, monitor and control your (embedded) systems remotely. m2m/IoT
Connect, monitor and control your systems or embedded devices remotely (m2m/IoT) - for example your Raspberry Pi. The communication interface is defined in XML automatically providing a REST interface. NexusDataLink integrates smoothly in existing software or firmware and significantly reduces connection- or communication-related source code. -
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ccwatcher
A computational chemistry monitoring, parsing and plotting application
ccwatcher monitors the progress of computational chemistry calculations during runtime. It has both a GUI and a "Command Line Interface" to which it parses important output and plots SCF energies. -
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The library for utilization of Minimal Quadtree format for storing very large sparse matrices. Please see the paper referenced below for the description of a problem. Corresponding papers: Tree-based Space Efficient Formats for Storing the Structure of Sparse Matrices (I. Šimeček, D. Langr, P. Tvrdík), In Scalable Computing: Practice and Experience, volume 15, 2014. Space Efficient Formats for Structure of Sparse Matrices Based on Tree Structures (I. Šimeček, Daniel Langr, Pavel...
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openSEQ
NGS compute distro proloaded with pipeline analysis software
Forked Ubuntu 14.04 minimal install with XOrg and FluxBox desktop environment for web-based pipeline construction and job submission. HOWTO: 1) Set VM network settings to a bridged adapter type. 2) Load VM to client 3) From host: $ ssh -X ubuntu@<foobar> 'firefox && butterfly.server.py --unsecure' --- passwd = 616287xx 5) or ssh into host with X forwarding, and type runme This will launch an X-session of Firefox on the client, which will then be forwarded to the host. The... -
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arcgis-viewer-flex
Source code for ArcGIS Viewer for Flex - a great application framework
The ArcGIS Viewer for Flex is a customizable, open-source framework for building rich GIS web applications using Adobe Flex and ArcGIS Server. It provides a modular structure with built-in map tools, widgets, and themes. Users can create interactive maps with minimal coding and extend the viewer with custom widgets for tasks like geocoding, editing, and routing. It was widely used before HTML5-based viewers became standard. -
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metro
CLI tool that computes possible paths between two train stations
Metro is a CLI tool that computes possible paths between two stations. It is written in Perl and available under the BSD license. -
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ReorJS
Distributed Computing with JavaScript
Create your own distributed computer that can distributed javascript based applications to any computer with a web browser, headless browser or node.js installation. For more information and updates please see our website - http://reorjs.com. -
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phpBathymetry
Using PHP-CLI to parse NMEA data to generate depth maps with GD
Using PHP-CLI to parse NMEA data to generate depth maps with GD. As fishing is a passion of mine,and it got me to consider using the NMEA formatted data output from my Lowrance 5-DSI Elite to generate a bathymetric map of the lake at my cottage. It is currently very crude, just a bunch of CLI scripts that record NMEA data, and the other parses the stored data and builds a depth, water temperature and sample frequency map. -
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LGML
LGPL GML parser
LGML is a GML parser under the LGPL license. The aim is to parse a GML document or fragment in order to get a WKT output. 2D and 3D inputs are both handled, but it is not permitted to have mixed geometries. The caller can choose if the input coordinates are parsed as X, Y, Z (if present) order, or Y, X, Z (if present) order. The willing of the project is to be a starting point useful for developers that need to parse GML objects in order to use them, for example, in the context of OGC... -
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q pipeline manager
q: integrated platform for pipeline configuration and management
The q utility is a platform for creating and managing data analysis pipelines. It expands the value of your existing job scheduler - either Grid Engine or TORQUE PBS - through numerous functions that help you organize, submit, monitor, manage and share your informatics work. Data processing pipelines require high-level organization and parallelization of work to optimize resource utilization and decrease the time to results. q (from queue) allows complex job sequences to be efficiently... -
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Pyphant is a framework for scientific data analysis. It features a flexible plugin architecture allowing for the application in many different fields. For the analysis a graph of processing steps is constructed, that can be applied via the cli as well.
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It is a software to program ISP based 8051 controllers(89SXX) on Linux. The software decodes the hex file entered from the command line and send it to controller's flash memory using PC's parallel port.The hardware connections are very minimal.
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HPN cli calculator
A functional HP-style command-line RPN scientific calculator
HPN is a functional - as opposed to microcode - cross-platform emulation of a classic 1970s Hewlett-Packard scientific calculator for any command-line interface. Its operations completely model the historical and groundbreaking HP-35 series, and functions to support the HP-45 and the later HP-65, 67 and HP-15C are in the pipeline.
