Showing 4338 open source projects for "java-decompiler.jar"

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  • 1
    BABA stands for Basic-Algorithms-of-Bioinformatics Applet. This project aims to create a set of bioinformatic algorithms presented didactically. The algorithms available at the moment are: Needleman&Wunsch, Smith&Waterman, Four Russians and Nussinov.
    Downloads: 2 This Week
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  • 2

    3D Grapher

    Easy-to-use software for plotting functions of two variables.

    3D Grapher is a software for plotting functions of two variables. It is a simple, easy to use, GPU accelerated, tool for making various surface plots. Additional requirements: JDK / JRE 8 OpenGL 2+
    Downloads: 0 This Week
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  • 3
    ICon (Input Configurator) is a Java-based system for managing input devices and building advanced interaction techniques using a dataflow model. It contains a runtime engine, a rich library of input devices, several processing modules and a visual editor.
    Downloads: 0 This Week
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  • 4
    Phrasal

    Phrasal

    Statistical phrase-based machine translation system

    Stanford Phrasal is a state-of-the-art statistical phrase-based machine translation system, written in Java. At its core, it provides much the same functionality as the core of Moses. Distinctive features include: providing an easy to use API for implementing new decoding model features, the ability to translating using phrases that include gaps (Galley et al. 2010), and conditional extraction of phrase-tables and lexical reordering models.
    Downloads: 1 This Week
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  • 5
    Mauve computes and interactively visualizes genome sequence comparisons. Using FastA or GenBank sequence data, Mauve constructs multiple genome alignments that identify large-scale rearrangement, gene gain, gene loss, indels, and nucleotide substutit
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  • 6
    Phylobuntu is a software package that contains 37 software tools related to phylogenetic profile trees. Phylobuntu aims to provide a complete workstation for phylogenetic analysis
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  • 7
    DCMLinux - Dicom Linux Distribution

    DCMLinux - Dicom Linux Distribution

    Dicom PACS solution for free.

    DCMLinux is a complete PACS system, free of charge. Its core is an Ubuntu 14.04 system fully updated and it contains the DCM4CHEE as its PACS server. In the near future it will contain many other addons such as Weasis, Oviyam, Care2x, etc. Just download the iso, burn it to a CD and boot it up. No need to configure any files of dcm4chee, DCMLinux installer asks for everything it needs to configure a running PACS in minutes. Project Wiki : http://wiki.dcmlinux.org Project Forums:...
    Downloads: 0 This Week
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  • 8
    RoWordNetLib

    RoWordNetLib

    Java API for the Romanian WordNet

    Java API for the Romanian WordNet. Please note that the actual WordNet for Romanian (the XML file containing the network) is not included, it can be obtained (due to its license restrictions) from: http://ws.racai.ro:9191/repository/browse/romanian-wordnet-30/4611a43efb6811e2a8ad00237df3e3580b6b50d1111c4a6292694bded91d5c14/ **** If you would like a direct download of the API containing the RoWordNet xml file, please download them both from : http://www.racai.ro/tools/text/rowordnet/ **** Please cite: Dumitrescu, Ștefan Daniel. ...
    Downloads: 0 This Week
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  • 9

    bioNerDS

    Bioinformatics Named Entity Recogniser for Databases and Software

    Downloads: 0 This Week
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  • 10
    CoNet

    CoNet

    Find relationships between repeatedly observed items

    CoNet is a Cytoscape plugin that detects significant non-random patterns of co-occurrence (copresence and mutual exclusion) in incidence and abundance data. It has been designed with (microbial) ecological data in mind, but can be applied in general to infer relationships between objects observed in different samples (for example between genes present or absent across organisms).
    Downloads: 0 This Week
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  • 11
    BenchLab is a Web Application benchmarking framework using real web browsers.
    Downloads: 5 This Week
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  • 12
    Entity recognition and normalization software for biomedical text
    Downloads: 30 This Week
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  • 13

    sgmweka

    Weka wrapper for the SGM toolkit for text classification and modeling.

    ...Has lower time complexity of classification than comparable software due to inference based on sparse model representation and use of an inverted index. The provided .zip file is in the Weka package format, giving access to text classification. Other functions are usable through either Java command-line commands or class inclusion into Java projects.
    Downloads: 16 This Week
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  • 14
    SILA

    SILA

    Automated bacterial and archaeal genome annotation system

    SILA is a system for automated annotation of bacterial and archaeal genomes. It provides accurate gene prediction using a combination of tools (Prodigal and HGF) and a web site for task management and visualization of annotation. This project is in alpha stage. Please use the online service available at: http://www.bioinfo.ufpr.br/SILA/login.jsp Documentation (portuguese only): http://hdl.handle.net/1884/34801
    Downloads: 0 This Week
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  • 15

    VnDP

    A Vietnamese dependency parsing toolkit

    VnDP is a Vietnamese dependency parsing toolkit which integrates a pre-trained parsing model and a pre-trained POS tagging model. The parsing model was trained on our VnDT Vietnamese dependency Treebank which was automatically converted from the Vietnamese constituent Treebank. See more details in VnDP's website at http://vndp.sourceforge.net/
    Downloads: 0 This Week
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  • 16
    This ohnlp project has released "pipelines" that were contributed by members of the OHNLP Consortium. The pipelines are based on the Apache UIMA framework. medKAT/P, MedCoref, MedTagger, MedXN, and cTAKES are licensed under Apache License V2.0. MedTime is licensed under GNU General Public License version 3.0 (GPLv3). cTAKES development has moved to apache.org. See http://ctakes.apache.org/
    Downloads: 0 This Week
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  • 17

    jarta

    A Java library to model and fit ARTA processes.

    Downloads: 0 This Week
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  • 18
    DualSPHysics

    DualSPHysics

    C++/CUDA/OpenMP based Smoothed Particle Hydrodynamics (SPH) Solver

    ...The code is developed to study free-surface flow phenomena where Eulerian methods can be difficult to apply, such as waves or impact of dam-breaks on off-shore structures. DualSPHysics is a set of C++, CUDA and Java codes based on the SPHysics FORTRAN project (www.sphysics.org) that are designed to deal with real-life engineering problems and are provided along with pre-compiled binaries and source for Windows/Linux/Unix as well as a number of example test cases.
    Downloads: 1 This Week
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  • 19
    For the process of RDF dataset transformation the R2R Framework specifies a mapping language and an implementation in form of a a Java API. More infos at: http://www4.wiwiss.fu-berlin.de/bizer/r2r/
    Downloads: 15 This Week
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  • 20
    GLORIA Project

    GLORIA Project

    GLObal Robotic-telescopes Intelligent Array for e-Science

    GLORIA stands for "GLObal Robotic-telescopes Intelligent Array". GLORIA will be the first free and open- access network of robotic telescopes of the world. It will be a Web 2.0 environment where users can do research in astronomy by observing with robotic telescopes, and/or analyzing data that other users have acquired with GLORIA, or from other free access databases, like the European Virtual Observatory (http://www.euro-vo.org).
    Downloads: 0 This Week
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  • 21
    RAPSim - Microgrid Simulator

    RAPSim - Microgrid Simulator

    An easy to use GUI enables electric source and grid simulation.

    RAPSim (Renewable Alternative Powersystems Simulation) is a free and open source micro-grid simulation framework for better understanding of power flowing behavior in smart microgrids with renewable sources. It is able to simulate grid-connected or standalone microgrids with solar, wind or other renewable energy sources. The proposed software calculates the power generated by each source in the microgrid and then it conducts a power flow analysis. This software is helpful for optimal...
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    Downloads: 7 This Week
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  • 22
    Limpopo is a library for MAGE-TAB parsing and validation that will read mage-tab files into an object model, and includes a plugin mechanism that is open and extensible for writing MAGE-TAB data to other data resources such as a database.
    Downloads: 0 This Week
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  • 23

    erne

    ERNE - Extended Randomized Numerical alignEr

    We present ERNE (Extended Randomized Numerical alignEr), a short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads. ERNE comprises ERNE-FILTER (read trimming and continamination filtering), ERNE-MAP (core alignment tool/algorithm), ERNE-BS5 (bisulfite treated reads aligner), and ERNE-PMAP/ERNE-PBS5 (distributed versions of the aligners),
    Downloads: 0 This Week
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  • 24
    RDKit

    RDKit

    Open-Source Cheminformatics and Machine Learning

    ...NOTE: the RDKit source code and downloads are now in github: https://github.com/rdkit/rdkit The core algorithms and data structures are written in C++. Wrappers are provided to use the toolkit from either Python or Java. Additionally, the RDKit distribution includes a PostgreSQL-based cartridge that allows molecules to be stored in relational database and retrieved via substructure and similarity searches.
    Downloads: 4 This Week
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  • 25
    SuperCollider

    SuperCollider

    Real-time audio synthesis engine and music programming language

    N.B. SuperCollider is now hosted at GitHub, and the most recent versions can be downloaded from there. http://supercollider.github.io A real time audio synthesis engine, and an object-oriented programming language specialised for music. SuperCollider was created in 1996 by James McCartney, now (since version 3) released as free software.
    Downloads: 6 This Week
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