Showing 1454 open source projects for "assembly source code"

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  • 1
    Identikit
    A basic and easy java program to make black and white identikit drawing ,with a library of face elements that you can also modify and expand without limit !Source code available. Also available a very rough base for a 3D construction of the face.
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    Downloads: 8 This Week
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  • 2

    neuranep

    Neural Network Engineering Platform

    A parallel-programming framework for concurrently running large numbers of small autonomous jobs, or microthreads, across multiple cores in a CPU or CPUs in a cluster. NeuraNEP emulates a distributed processing environment capable of handling millions of microthreads in parallel, for example running neural networks with millions of spiking cells. Microthreads are general processing elements that can also represent non-neural elements, such as cell populations, extracellular space, emulating...
    Downloads: 0 This Week
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  • 3

    uaiMockServer

    uaiMockServer will create a Rest Server for you with only one command

    Create a mock server to your tests with just one command line. The documentation can be found in: http://uaimockserver.com The source code in here: https://github.com/uaihebert/uaiMockServer
    Downloads: 0 This Week
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  • 4

    AMOS

    AMOS is a collection of tools for genome assembly

    AMOS is a collection of tools and class interfaces for the assembly of DNA reads. The package includes a robust infrastructure, modular assembly pipelines, and tools for overlapping, consensus generation, contigging, and assembly manipulation.
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    Downloads: 23 This Week
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  • 5
    MPI/C++ code to generate initial conditions for cosmological simulations using multiscale gaussian random fields, based on Edmund Bertschinger's GRAFIC-2 package. Provides a replacement for both grafic1 and grafic2.
    Downloads: 0 This Week
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  • 6
    C/C++ Program Perfometer

    C/C++ Program Perfometer

    The program enables to get performance of C/C++ program for any metric

    The program enables to get performance of C/C++ program and separated pieces of code for any metrics (for instance : time, memory, metrics defined by user etc.). The measurement results are represented in detailed/summary reports. Latest Version: 2.10
    Downloads: 0 This Week
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  • 7

    LightCAS

    LightCAS is very lightweigth Computer Algebra System

    LightCAS is lightweight Computer Algebra System. Its size is less that 50K of compiled code. LightCAS can parse, display, evaluate and simplify mathematical expressions. It can also compute derivatives, find solutions of one or second order expressions, solve systems of equations, compute Taylor series. Its code is intended to be full configurable for most applications.
    Downloads: 0 This Week
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  • 8

    Automatic cell lineage reconstruction

    Automatic segmentation and tracking for 3D time-lapse microscopy

    ...Our approach achieves on average 97.0% linkage accuracy across all species and imaging modalities." *Please cite this paper if you use this code for your research
    Downloads: 0 This Week
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  • 9
    CellCompiler
    The target system of this project is to develop mathematically efficient program code generator from cellml like biological models described by mathematical markup languages.
    Downloads: 1 This Week
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  • 10

    Face Recognition System

    Face Recognition System Matlab source code

    Research on automatic face recognition in images has rapidly developed into several inter-related lines, and this research has both lead to and been driven by a disparate and expanding set of commercial applications. The large number of research activities is evident in the growing number of scientific communications published on subjects related to face processing and recognition. Index Terms: face, recognition, eigenfaces, eigenvalues, eigenvectors, Karhunen-Loeve algorithm.
    Downloads: 0 This Week
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  • 11
    MICA-aligner

    MICA-aligner

    Next-generation sequencing short reads aligner based on Intel® MIC

    Latest Code in GitHub: https://github.com/aquaskyline/MICA-aligner To better utilize MIC-enabled computers for NGS data analysis, we developed a new short-read aligner MICA that is optimized in view of MIC’s limitation and the extra parallelism inside each MIC core. Experiments on aligning 150bp paired-end reads show that MICA using one MIC board is ~4.85 times faster than the CPU-(multi-core)-based BWA-MEM and about the same speed as the GPU-based SOAP3-dp. Furthermore, MICA’s...
    Downloads: 0 This Week
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  • 12
    SOAP3-DP

    SOAP3-DP

    Fast, Accurate and Sensitive GPU-based Short Read Aligner

    Latest Code on GitHub: https://github.com/aquaskyline/SOAP3-dp SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneously. Compared with widely adopted aligners including BWA, Bowtie2, SeqAlto, CUSHAW2, GEM and GPU-based aligners BarraCUDA and CUSHAW, SOAP3-dp was found to be two to tens of times faster, while maintaining the highest sensitivity and lowest false discovery rate (FDR) on Illumina...
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  • 13

    Fingerprint Recognition System

    Fingerprint Recognition System 5.3 - Matlab source code

    The proposed filter-based algorithm uses a bank of Gabor filters to capture both local and global details in a fingerprint as a compact fixed length FingerCode. The fingerprint matching is based on the Euclidean distance between the two corresponding FingerCodes and hence is extremely fast. We are able to achieve a verification accuracy which is only marginally inferior to the best results of minutiae-based algorithms published in the open literature. Our system performs better than a...
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  • 14
    Mathematical library utilising SIMD features of common processors to accelerate many commonly-used algorithms where compilers fear to tread.
    Downloads: 0 This Week
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  • 15
    fPotencia

    fPotencia

    Power flow library in C++

    fPotencia is the fruit of free time and passion for power systems simulation. After observing the lack of ready-to-implement libraries for power system analisys, and that the existing ones focus on command line workflow, I decided myself to start a project to fill the gap. Since Power system simulations have started needing to be executed in parallel, the old C-like designs are outdated; modular design is now needed to launch many simulations at the same time based on a base...
    Downloads: 0 This Week
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  • 16
    igafem

    igafem

    Open source 3D Matlab Isogeometric Analysis Code

    Isogeometric analysis (IGA) is a fundamental step forward in computational mechanics that offers the possibility of integrating methods for analysis into Computer Aided Design (CAD) tools and vice versa. The benefits of such an approach are evident, since the time taken from design to analysis is greatly reduced leading to large savings in cost and time for industry. The tight coupling of CAD and analysis within IGA requires knowledge from both fields and it is one of the goals of the...
    Downloads: 2 This Week
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  • 17

    MetricKnn

    Fast Similarity Search using the Metric Space Approach

    ...The intended users are software developers, academics, students and data scientist who need to efficiently compare objects according to some criteria. MetricKnn is an open source project released under the BSD 2-Clause License. The source code is available in GitHub https://github.com/juanbarrios/metricknn. For more information please visit the project's homepage: http://metricknn.org/
    Downloads: 1 This Week
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  • 18
    Advanced Normalization Tools ( ANTs )

    Advanced Normalization Tools ( ANTs )

    Multidimensional image registration, segmentation and statistics

    *** This is an archive only, please see https://github.com/ANTsX for this and other ANTsX tools *** Image registration with variable transformations (elastic, diffeomorphic, diffeomorphisms, unbiased) and similarity metrics (landmarks, cross-correlation, mutual information, etc). Image segmentation with priors & nonparametric, multivariate models. *** Current ANTs code, binaries (Mac, Windows, Linux) and support is hosted at Github *** https://github.com/ANTsX/ANTs Docker...
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    Downloads: 10 This Week
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  • 19
    eANN

    eANN

    eANN is an implementation of several kind of neural networks.

    eANN is an implementation of several kind of neural networks written with the intention of providing a (hopefully) easy to use, and easy to modify, OOP source code. It is possible to have several different sized networks running simultaneously, each functioning independently of the others or acting as inputs between them. It also easy to modify the structure so that neurons (or even whole layers) can be created/pruned during simulation allowing dynamic expansion/contraction of the network.
    Downloads: 0 This Week
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  • 20

    8051 Simulator

    Simulator of 8051 microcontrolers

    Software for simulation 8051 instructions. It can translate all 255 instructions, but instructions for external memory are not implemented yet. 8051 simulator have nice GUI based on Qt where you can load your programs in assembly language, run them, step them, debug them and so... GUI shows all registers and their values you can also connect virtual LED, 7seg or button module to any port of microcontroler. It's not in english... but hey, just follow pictures
    Downloads: 10 This Week
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  • 21
    arcgis-viewer-flex

    arcgis-viewer-flex

    Source code for ArcGIS Viewer for Flex - a great application framework

    The ArcGIS Viewer for Flex is a customizable, open-source framework for building rich GIS web applications using Adobe Flex and ArcGIS Server. It provides a modular structure with built-in map tools, widgets, and themes. Users can create interactive maps with minimal coding and extend the viewer with custom widgets for tasks like geocoding, editing, and routing. It was widely used before HTML5-based viewers became standard.
    Downloads: 0 This Week
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  • 22
    RoboComp
    RoboComp is a robotics framework providing a set of open-source, distributed, real-time robotic and artificial vision software components and the necessary tools to create and manage them.
    Downloads: 0 This Week
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  • 23
    mitoMaker

    mitoMaker

    mitoMaker - a mitochondria assembly and annotation script

    mitoMaker is a pipeline script developed to simplify the assembly and automatic annotation of mitochondrial genomes, based on raw NGS reads and an optional target reference. mitoMaker calls well known assemblers and algorithms, such as SOAPdenovo, MIRA and blast+ and parses their results providing easily readable outputs, such as FASTA, GENBANK, SEQUIN, PNG and others. General pipeline: 1-iterative De Novo assembly, with different k-mer values, trying to assemble a build that matches...
    Downloads: 1 This Week
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  • 24

    wmtsa-python

    Discrete wavelet methods for time series analysis using python

    Several python libraries implement discrete wavelet transforms. However, none of them, or at least none that I know, is aimed at scientific use. This library aims at filling this gap, in particular considering discrete wavelet transform as described by Percival and Walden. This module started as translation of the wmtsa Matlab toolbox (http://www.atmos.washington.edu/~wmtsa/), so most naming conventions and most of the code structure follows their choices. The code uses a mix of python and...
    Downloads: 0 This Week
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  • 25
    Biogenesis X Mod

    Biogenesis X Mod

    Mod of the evolution simulation and artificial life program Biogenesis

    ...Compared to the original project, this modification explores the following features: * alternative mutation mechanisms * an alternative stress-based aging mechanism It is based on the new_design branch of Biogenesis (https://sourceforge.net/p/biogenesis/git/ci/new_design/tree/), its source code can be obatained from http://sourceforge.net/p/biogenesisxmod/code/ci/xmod/tree/ If you want to post a review, remember that this is only a modification, so comment on my changes, not on the simulation. Biogenesis discussion forum: https://sourceforge.net/p/biogenesis/discussion/
    Downloads: 0 This Week
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