Search Results for "java wiki" - Page 2
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Showing 62 open source projects for "java wiki"
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NOTE: Use of this codebase is NOT RECOMMENDED. This project has been migrated to github at http://jaerproject.net (or https://github.com/SensorsINI/jaer for the Java code). Commits have been disabled for the subversion sourceforge repository and new development is being done on the github repository. Java tools for Address-Event Representation (AER) neuromorphic processing. Uses USB hardware. See wiki at https://sourceforge.net/p/jaer/wiki/
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Data2FCS
Data2FCS is a simple tool to convert text data files to FCS3.1 data.
...A special treat is the possibility to transform categorical data into numerical data. The resulting FCS data file can be analysed in regular flow cytometry softwares, such as the open source FCSaylzer. For more info, take a look at the Wiki. Data2FCS needs Java 1.7 or higher to run. -
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PMM-Lab
Predictive Microbial Modeling plug-in for KNIME
PMM-Lab is an open-source extension to the Konstanz Information Miner (KNIME). It consists of three components: • a library of KNIME nodes (called PMM-Lab), • a library of “standard” workflows • an HSQL database.to store experimental data and microbial models. Altogether these components are designed to ease and standardize the statistical analysis of experimental microbial data and the development of predictive microbial models (PMM). Users can apply PMM-Lab to proprietary or public... -
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DCMLinux - Dicom Linux Distribution
Dicom PACS solution for free.
DCMLinux is a complete PACS system, free of charge. Its core is an Ubuntu 14.04 system fully updated and it contains the DCM4CHEE as its PACS server. In the near future it will contain many other addons such as Weasis, Oviyam, Care2x, etc. Just download the iso, burn it to a CD and boot it up. No need to configure any files of dcm4chee, DCMLinux installer asks for everything it needs to configure a running PACS in minutes. Project Wiki : http://wiki.dcmlinux.org Project Forums:... -
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Bamformatics
Toolkit and GUI for sequencing data analysis
The Bamformatics project aims to provide a coherent and consistent approach to analysis of high-throughput sequencing data. Its toolkit includes, among others, programs to identify variants and to compute various types genomic tracks. It also provides a graphical user interface to facilitate general bioinformatic workflows. The project wiki contains further details. -
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Ichnaea
Performance Timing Tools
Ichnaea is a set of tools that aid in collecting and tracking parameters and timings for parallel applications. The Performance Modelling Timing Module, PMTM, is a library that wraps system timing calls to abstract these from code developers and aid portability. It also has functionality to store parameters and print those, along with the timing information to a comma separated variable file. The Performance Modelling Analysis Tool, PMAT, is coming soon. This is able to read in and... -
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GeneticThesaurus
Annotation of genetic variants in repetitive regions
GeneticThesaurus enables analysis of genetic variation in repetitive regions. See project wiki for details. -
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SoNIA (Social Network Image Animator)
Social Network Image Animator creates animations of network data
SoNIA (Social Network Image Animator) is a Java-based package for visualizing dynamic or longitudinal network data and rendering it out as animations. The home page with examples is located at http://sonia.stanford.edu Documentation is at https://sourceforge.net/p/sonia/wiki/Main_Page/ -
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TUIT
Taxonomic Unit Identification Tool
For the installation instructions please see Wiki page: https://sourceforge.net/p/tuit/wiki/ IMPORTANT: since version 1.0.4.0 TUIT allows to select RDP-like formatted output to improve out of the box compatability with tools, that assume RDP-formatted input. A new field has been added to the properties.xml, please make sure to update it to contain <OutputFormat format="tuit"/> or <OutputFormat format="rdp"/> in the <BLASTNParameters> section. Read our paper in Biotechniques:... -
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Bibtex Import
Imports bibtex references from MathSciNet
Uses MathSciNet to search for bibtex references. The matching references can then be edited and added to a local file. For information on how to use this software please consult the wiki. Requires a MathSciNet subscription. -
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TriageTools
Tools for partitioning and prioritizing fastq data
TriageTools is a collection of tools for partitioning raw data (fastq reads) from high-throughput sequencing projects. The tools are designed for basic data management as well for prioritizing analysis of certain subsets. The project wiki contains usage information. -
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Handwritten Signature SDK
Java SDK useful to develop handwritten signature verification app
Handwritten Signature SDK supports: dynamic time wrapping (DTW), extended regression (ER), signature sampling, direction hash and features extraction: see wiki for more info. -
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WOLFSIM: Wideband Optical FDTD Simulator
FDTD Electomagnetic Wave Simulation Software
WOLFSIM is a Finite-Difference Time-Domain electromagnetic simulator, designed to be easy to use but still very powerful, developed and maintained by researchers at North Carolina State University. It's features include: -1D, 2D, and 3D structures that are periodic in 1 or 2 dimensions -Materials that are anisotropic in permittivity and conductivity -Obliquely incident sources -Built-in vectorial (i.e. full polarization) near-to-far-field transformation See these... -
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LQFB-analyser
A lqfb delegation analyser. A 3d directed weighted multi graph.
A rich client to analyse data from a liquid-feedback (http://liquidfeedback.org/) instance, for now it's a 3d graph explorer to inspect the delegations. It's an application based on the eclipse platform (indigo). To be precise its a directed weighted multi graph browser in 3d. Find out more in the wiki https://sourceforge.net/p/lqfbanalyser/wiki/Home/ . Generated reports https://sourceforge.net/p/lqfbanalyser/wiki/generated%20lqfb%20reports/ . -
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ECG2HRV
import and store ECG, associate to clinical data, automatic HRV
http://www.youtube.com/watch?v=AOzpNMC-FXU This multi-platform application will enable the user to import digital CSV ECGs at any sampling rate and store them in an encrypted local DB along with relevant clinical data of the patient. It also performs automatic QRS complex detection and RR interval classification showing the output in a visual chart that the user can edit to correct sources with artifacts or pats with bad detections. This project was developed using Netbeans 7.3... -
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PARSEC - PAtteRn SEarch / Context
PARSEC - PAtteRn SEarch and Contextualization
The characterization of genomic sites is a major challenge in the understanding and exploitation of next generation sequencing data. Most genomic sites are represented by short, degenerated motifs with a scattered distribution and sometimes with biological function (ex: regulation of gene expression, splicing patterns or epigenetics signals). These motifs are associated with a huge amount of noise and thus, the development of a computational platform for accurate detection of genomic sites... -
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SeqWare has moved to GitHub, see https://github.com/SeqWare SeqWare is a project to create a tool set to work with next generation genome sequencers (SOLiD & Illumina). It includes a LIMS, Pipeline, and Query Engine. Check out the wiki link below to see documentation. You can get the source from the Develop link.
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Multilingual Content Synchronization with Wikis: CoSyne is a Research and Technological Development project co-funded by the European Union. Details: http://cosyne.eu
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OGEMA allows software applications aiming at energy management and energy efficiency to be executed on an embedded computer (the Gateway) connected to building automation systems. OGEMA wiki https://www.ogema-source.net/wiki/
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Java Dynamic Component Framework
This is a lightweight java dynamic component framework
...The main goal of the Java Dynamic Component Framework (jdcf) is to simplify the writing (and reuse) of individual Java components, parts of distributed networked application. The model of the application is described in an XML file. The components are pure Java classes file using a pure Java middleware. Each component may be packaged in a jar or several related components may be packaged together. -
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locsmoc
piecewise polynomial curves for genomic signals
Locsmoc produces piecewise polynomial models for one-dimensional signals of the type encountered in genomics. The project wiki contains an overview of the tool and usage examples. -
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WindTunnel
A 3D wind tunnel simulator created in 2008 by a group of undergrads
A 3D wind tunnel simulator created in 2008 by a group of COMP314 students at The University of Waikato. The user is able to insert objects into the windtunnel and view a (very) rough simulation of the wind flowing around it. View the Wiki for detailed instructions on how to use it. Created by: Sam Sarjant, Kias Hafiz, David Spooner, Sam McIntosh, Kieran Ryan, Yong Chun Fu -
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Java Decision Diagram Libraries (BDD)
Java Decision Diagrams (BDD) libraries: JDD and JBDD
This project has been moved to bitbucket.org: - https://bitbucket.org/vahidi/jbdd/wiki/Home - https://bitbucket.org/vahidi/jdd/wiki/Home It includes two libraries for working with decision diagrams: - JBDD: a Java interface to two popular BDD libraries, CUDD and BuDDy - JDD: a native Java library supporting BDD, Z-BDD -
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OpenBR24
Lowrance Navico BR24 Radar Network Protocol Implementation
OpenBR24 is a sample implementation of the Lowrance Navico BR24 network protocol as described in our paper. A (complete) preprint version is available at http://www.cci.dmu.ac.uk/administrator/components/com_jresearch/assets/publications/1326903964.pdf The final publication is available in print (Robotic Sailing, 2011, ISBN 978-3-642-22835-3) and online at http://www.springerlink.com/content/m7n253u08u3h5u67/ For FAQ see Wiki: https://sourceforge.net/p/openbr24/wiki/ -
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Welcome to the Qualyzer wiki. Qualyzer supports researchers conducting qualitative inquiries by helping them manage participants, transcripts, and memos.
