Showing 2371 open source projects for "command line"

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  • 1
    SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format. The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools
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    Downloads: 361 This Week
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  • 2
    SAGA GIS
    SAGA - System for Automated Geoscientific Analyses - is a Geographic Information System (GIS) software with immense capabilities for geodata processing and analysis. SAGA is programmed in the object oriented C++ language and supports the implementation of new functions with a very effective Application Programming Interface (API). Functions are organised as modules in framework independent Module Libraries and can be accessed via SAGA’s Graphical User Interface (GUI) or various scripting...
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    Downloads: 7,907 This Week
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  • 3

    Practically Random

    statistical tests & psuedo- random number generators (RNGs, PRNGs)

    Randon number generation & testing. The best suite of statistical tests for fast PRNGs anywhere. Multithreaded for speed, command line tools for automation, no upper limit on data size. Also, a variety of C++ pseudo-random number generators with well designed interfaces aimed at practical uses, not just research.
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    Downloads: 60 This Week
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  • 4
    EMC: Enhanced Monte Carlo; A multi-purpose modular and easy extendable solution to molecular and mesoscale simulations
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    Downloads: 43 This Week
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  • 5
    Enhanced version of Brill's Parts-of-Speech Tagger with built-in Tokenizer and Lemmatizer.
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    Downloads: 18 This Week
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  • 6
    Elk
    An all-electron full-potential linearised augmented-planewave (FP-LAPW) code. Designed to be as developer friendly as possible so that new developments in the field of density functional theory (DFT) can be added quickly and reliably.
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    Downloads: 104 This Week
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  • 7
    OpenPFGW is software that is designed to perform PRP and primality tests on numbers of specific forms. This software currently run on any x86 hardware with the support of George Woltman's gwnum library, the same library behind GIMPS and Prime95.
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    Downloads: 35 This Week
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  • 8
    RPNCalc

    RPNCalc

    RPNCalc - The command line Reverse Polish Notation (RPN) Calculator

    RPNCalc is the command-line based Reverse Polish Notation (RPN) calculator. RPN calculators make it very simple to do complex calculations, especially if there are parentheses involved. I've created a User Guide (https://frossm.github.io/RPNCalc-UserGuide) to do a better job of explaining how to use RPNCalc than the old readme.md file, which was getting really long.
    Downloads: 5 This Week
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  • 9
    GNSS-SDR

    GNSS-SDR

    An open source software-defined GNSS receiver

    An open source software-defined Global Navigation Satellite Systems (GNSS) receiver written in C++ and based on the GNU Radio framework.
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    Downloads: 1,575 This Week
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  • 10

    Subread

    High-performance read alignment, quantification and mutation discovery

    The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon junction detector and featureCounts read summarization program. Subread aligner can be used to align both gDNA-seq and RNA-seq reads. Subjunc aligner was specified designed for the detection of exon-exon junction. For the mapping of RNA-seq reads, Subread performs local alignments and Subjunc performs global alignments. Subread and Subjunc were published in...
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    Downloads: 221 This Week
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  • 11
    SimSEE

    SimSEE

    Plataform for Simulation of Systems of Electrical Energy

    SimSEE is a tool for optimal dispatch of hydrothermal electrical power systems. Yo can simulate de operation of petroleum fired plants, wind and solar farms, country interconnections and hydro plants with reservoires.
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    Downloads: 52 This Week
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  • 12
    GMAT

    GMAT

    General Mission Analysis Tool

    The General Mission Analysis Tool (GMAT) is an open-source tool for space mission design and navigation. GMAT is developed by a team of NASA, private industry, and public and private contributors. The GMAT development team is pleased to announce the release of GMAT version R2026a. For a complete list of new features, compatibility changes, and bug fixes, see the R2026a Release Notes in the Users Guide.
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    Downloads: 748 This Week
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  • 13

    Java-Enigma

    Enigma Encryption Simulator in Java

    This program is an offline and stand-alone Java application which simulates the Enigma encryption machine that was used during World War II.
    Downloads: 4 This Week
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  • 14
    Open Programmer

    Open Programmer

    An USB programmer for PIC, dsPIC, AVR, serial memories

    An USB programmer for various devices, including PIC, dsPIC, AVR microcontrollers, and various kinds of serial eeproms
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    Downloads: 70 This Week
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  • 15

    MView

    Extract and reformat a sequence database search or multiple alignment

    NOTE: The MView repository and web pages have moved to: https://github.com/desmid/mview https://desmid.github.io/mview/ Release tarballs will continue to be uploaded to SourceForge. ---- MView is a command line utility that extracts and reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup for web page layout. It can also be used as a filter to extract and convert searches or alignments to common formats. Inputs: - Sequence database search: BLAST, FASTA suites. - Multiple sequence alignment: CLUSTAL, HSSP, MSF, FASTA, PIR, MAF. ...
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    Downloads: 15 This Week
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  • 16
    astroTools

    astroTools

    Command-line tools for astronomy and astrophysics

    Command-line tools for astronomy and astrophysics, written in Fortran.
    Downloads: 0 This Week
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  • 17
    Asymptote

    Asymptote

    2D & 3D TeX-Aware Vector Graphics Language

    Asymptote is a powerful descriptive vector graphics language for technical drawing, inspired by MetaPost but with an improved C++-like syntax. Asymptote provides for figures the same high-quality typesetting that LaTeX does for scientific text.
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    Downloads: 139 This Week
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  • 18
    GWtool

    GWtool

    Simple tools for working with gravitational waves

    GWtool: simple tools for working with gravitational waves
    Downloads: 7 This Week
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  • 19
    A Matlab toolkit for all aspects of EEG/ERP analysis, especially PCA. If you run into a problem, please send me a note and I'll fix it. The tutorial pdf is in the documentation folder and the tutorial data can be downloaded from a link provided by the pdf. The tutorial file has full install instructions. For all platforms supported by Matlab.
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    Downloads: 10 This Week
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  • 20
    Community Z Tools

    Community Z Tools

    Tool support for the Z formal notation

    Community Z Tools Project (CZT): Tools for editing, typechecking and animating Z specifications and related notations. Includes a Java framework for building formal methods tools. NOTE: development of CZT has now moved to GitHub: https://github.com/community-z-users/czt
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    Downloads: 49 This Week
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  • 21
    Madagascar
    Madagascar is a software package for geophysical data processing and reproducible numerical experiments. The package mission is to provide a convenient environment for researchers working with digital image and data processing in geophysics and related fields.
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    Downloads: 16 This Week
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  • 22
    Biosignal Tools
    BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. About 50 different data formats are supported.
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    Downloads: 108 This Week
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  • 23
    Wcalc

    Wcalc

    A powerful arbitrary-precision calculator.

    Wcalc is a powerful arbitrary-precision calculator. It has standard functions (sin, asinh, logtwo, floor, etc), many pre-defined constants (pi, e, c, etc.), variables, "active" variables, command history, and hex/octal/binary i/o, conversions, and more
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    Downloads: 11 This Week
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  • 24

    HYPE

    hydrological model for simulation of water and water quality over time

    Please go to project home (https://hypeweb.smhi.se/model-water/) or wiki-pages (http://hype.smhi.net/wiki/doku.php?id=start) for more information. The hydrological model HYPE is developed at the Swedish Meteorological and Hydrological Institute (SMHI). The model simulates water, nutrients and other substances in small and large river catchments. Included in the project is HYSS, which is needed to run the model. It handles input and output and the simuation over time.
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    Downloads: 31 This Week
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  • 25

    ERmod

    Approximate solvation free energy calculator

    ERmod (Energy Representation Module) is a program to calculate the solvation free energy based on the energy representation method (J. Chem. Phys. 113, 6070 (2000)). The program allows users to calculate the solvation free energy to arbitrary solvents, including inhomogeneous systems, and can run in cooperation with state-of-art molecular simulation software, such as LAMMPS, GROMACS and/or AMBER.
    Downloads: 10 This Week
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