Search Results for "java-legacy" - Page 19
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Showing 4357 open source projects for "java-legacy"
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JSiteDescriptor
Binding site descriptor generation for SVM based classification.
A set of java programs that extract coordinate and chemical information from PDB files. The binding site regions are extracted using grid based scheme. For binding site, spatio-chemical descriptor is generated based on PocketMatch algorithm of Dr. Kalidas (author of this project too). -
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As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site. Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the wiki: http://sourceforge.net/p/adamajava/wiki/Home/
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Smith Chart Calculator
Smith Chart Calculator JAVA
A small tool which allows all basic smith chart actions. This program was created for educational purposes. JAVA RUNTIME REQUIRED Tested on Windows. Some features may not available with other OS (e.g. copy to clipboard) GENERAL PUBLIC LICENSE There is a pdf help file online take a look in the files section. There is also a link available in the program itself. -
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2D Statistical Models. Building: shape model, texture model and concatenated appearance model; Fitting: 1D profile ASM, 2D profile ASM, direct local texture constrained(LTC) ASM, basic AAM, ICIA AAM, IAIA AAM, etc.
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TimescapeGlobal
a space-time interpolation geostatistical tool
This software is a time-aware geostatistical tool. Including time variability adds further issues to the already complicated field of geostatistical interpolation. On the other hand, most of the distributions of variables used in Earth and environmental sciences show patterns of change over time, not only in space. This tool is a free, open-source software, based on a generalization of the Inverse Distance Weighted algorithm. It outputs three-dimensional, layered discrete models from which... -
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Viwks
An application to download information on websites periodically.
An application to download information on websites periodically. First you create a new 'task', then you select the URL and click on the 'load page' button, after you close the new window you can rename the task, choose the interval, choose the tag and so on, after that you click 'save'. Back at the main menu you can select the 'task' you want, select an output folder and hit 'run'. It's that simple. -
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Penthode
Penthode simulates, draw and plot electrical power distributions
Given a simple net-list describing the high level power architecture of your system Penthode: - simulates the voltage and current from device turn on to the steady state. - highlights components working out of specification - draws a nice power tree diagram showing the currents/powers balance - plots node transient voltage and gate current waveforms It is possible to change component parameters interactively to improve the design -
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openCONFIGURATOR Eclipse Plugin
An eclipse plugin for the openCONFIGURATOR configuration tool
Eclipse update site: http://sourceforge.net/projects/eclipse-plugin.openconf.p/files/update-site/ KNOWN ISSUE WITH THE UPDATE SITE DUE TO SOURCEFORGE ENCRYPTION POLICIES: If you experience problems with the SSL handshake during update please refer to http://gnuarmeclipse.github.io/blog/2017/01/29/plugins-install-issue/ Install via Eclipse marketplace: https://marketplace.eclipse.org/content/ethernet-powerlink-openconfigurator The project provides a plugin for the... -
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chemicalInventory is a chemical intelligent tool for managing chemical inventories. Main features: Find chemicals via substructure or text searches. Manage container and shelf locations, check containers in and out or transfer containers between users.
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PressureEquipmentHazard
Hazard classification of Pressure Equipment
Hazard classification of Pressure Equipmenti on conformity to European directive 2014/68/UE, 97/23/CE (PED) or ASME BPVC -
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A java decision supporting application for the urban planning domain. It is designed as a desktop frontend to a Mixed Integer Programming engine. Actually it uses the GNU Linear Programming Kit (GLPK).
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MScheme
Scheme Interpreter implemented in Java
MScheme is a Scheme interpreter implemented in Java. The project goals are to fully comply with the "Revised^5 Report on Scheme" and a clean and modular design. -
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Eclipse Verilog editor is a plugin for the Eclipse IDE. It provides Verilog(IEEE-1364) and VHDL language specific code viewer, contents outline, code assist etc. It helps coding and debugging in hardware development based on Verilog or VHDL.
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Ethernet POWERLINK XDD Tool Suite
Provides eclipse plugins for XDD edit, validation and OD generation.
The plugins include functionality to edit and check CN / MN XDD / XDC files against the DS311 V1.2.0 and the DS 301 1.3.0 specification. Another plugin enables the user to generate the object dictionary header file from an XDD / XDC file for the openPOWERLINK (https://goo.gl/Cg77Oi) implementation. Please note that the validation functionality works properly for Controlled and Managing Node XDD / XDC files. Please use the update site to install the plugin in your eclipse... -
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A shell for using the methods of Contextual Logic to do qualitative data analysis, mathematical research on the theory underlying Conceptual Knowledge Processing, or learning Formal Concept Analysis. It uses the framework provided by the Tockit project..
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Mapyrus is software to plot Geographic Information System data to PostScript, PDF, SVG and web image files. Mapyrus combines a BASIC-like scripting language, reading GIS datasets and running as either a utility program, a Java Servlet, or as a webser
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JDistlib
Java library of statistical distribution
A Java package that provides routines for various statistical distributions. Based on R version 2.14.1 (continuously updated; current as of R v3.3.0). The major difference is that JDistlib is thread safe. The library contains the density (pdf), cumulative (cdf), quantile, and random number generator (RNG) routines of the following distributions: Ansari, Beta, Binomial, Cauchy, Chi square, Exponential, Fisher's F, Gamma, Geometric, Hypergeometric, Kendall, Logistic, Log normal, Negative binomial, Noncentral beta, Noncentral chi square, Noncentral f, Noncentral t, Normal, Poisson, Sign Rank, Spearman, Student's T, Tukey, Uniform, Weibull, Wilcoxon, and many more. ... -
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Taxoblast
Taxoblast is a pipeline to identify contamination in genomic sequence
Raw genomic sequences are frequently contaminated with sequences of other organism. Their identification is essential for the interpretation of genomic data. In this context it is essential to distinguish between horizontal gene transfers and contamination. The genomic context of sequences can help distinguish the two scenarios. Taxoblast splits genomic scaffolds into sub-sequences of defined length and for each of them determines the closest related taxon. It then summarizes this... -
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CSBB-v2.1 [CSBB-v3.0 is now available]
Computational Suite For Bioinformaticians and Biologists
CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX and Windows platforms. Currently CSBB provides 17 modules focused on analytical tasks like normalization, visualization, statistics, RNA-SEQ etc. -
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CSBB-v3.0
CSBB - Computational Suite for Bioinformaticians and Biologists
CSBB is a command line-based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX. Currently CSBB provides 18 modules focused on analytical tasks like performing upper-quantile normalization, interactive visualization and next generation sequencing pipelines. ... -
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A quantitative finance C++ library for modeling, pricing, trading, and risk management in real-life. A cross-platform free/open-source tool for derivatives and financial engineering.
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HIGH-THROUGHPUT TABULAR DATA PROCESSOR (HTDP) is Java application that is intended to facilitate data exploration and reduction tasks in large text files resulting from high throughput technologies, e.g. massively parallel sequencing or microarrays. The software has been optimized for microarray and deep parallel sequencing data, however it can accept any character delimited tabular data sets.
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The Teachingbox uses advanced machine learning techniques to relieve developers from the programming of hand-crafted sophisticated behaviors of autonomous agents (such as robots, game players etc...) In the current status we have implemented a well founded reinforcement learning core in Java with many popular usecases, environments, policies and learners. Obtaining the teachingbox: FOR USERS: If you want to download the latest releases, please visit: http://search.maven.org/#search|ga|1|teachingbox FOR DEVELOPERS: 1) If you use Apache Maven, just add the following dependency to your pom.xml: <dependency> <groupId>org.sf.teachingbox</groupId> <artifactId>teachingbox-core</artifactId> <version>1.2.3</version> </dependency> 2) If you want to check out the most recent source-code: git clone https://git.code.sf.net/p/teachingbox/core teachingbox-core Documentation: https://sourceforge.net/p/teachingbox/documentation/HEAD/tree/trunk/manual/
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The main purpose of CombiTagger is to read files generated by individual PoS taggers and use them to develop and evaluate combined taggers according to a given combination algorithm. http://aaai.org/ocs/index.php/FLAIRS/2009/paper/download/67/296