Showing 1454 open source projects for "assembly source code"

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  • 1

    SODE

    Program to solve differential equations using long Taylor series

    Program to generate a program to numerically solve either a single ordinary differential equation or a system of them.It is a Ruby program, now called omnisode, which generates either Ruby, C, C++, Maple or Maxima code. Code can be generated for all languages under Linux. Ruby can be generated under Windows. All can be generated under cygwin, but would need work on execution of Maple. Omnisode itself is Ruby, which is needed in all cases to generate the program.
    Downloads: 2 This Week
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  • 2

    CNVMM

    CNVMM performs copy number variations detection

    CNVMM specializes in identifying copy number variations (CNVs) when there are repeated sequences in the reference genome. The input file is a single short read mapping result from any short read aligners. However, NNmapper or Bowtie2, which detect all mapping results for multi-reads, are recommended. To use the code, MATLAB installation is required. Mac or Linus system is required.
    Downloads: 0 This Week
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  • 3

    ATOMKI Common Data Acquisition

    Nuclear physics data acquisition system

    Nuclear physics data acquisition system. The suit of applications can be used to collect data from physics experiments using CAMAC/CAEN/VME devices. The system is quite specialized, but the code can still be useful for others doing something similar...
    Downloads: 0 This Week
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  • 4
    KMC-KaiC

    KMC-KaiC

    Kinetic Monte Carlo simulation of the in-vitro Kai Circadian clock

    This code is a dedicated Kinetic Monte Carlo (KMC) algorithm which simulates a model of the post-translational Kai circadian clock. The code allows you to simulate the Kai system at the level of individual KaiC hexamers and monomers and explicitly tracks the turnover of every ATP nucleotide. Apart from ATP hydrolysis, all reactions obey detailed balance. The application of the code is described in our article titled "A Thermodynamically consistent model of the post-translational Kai...
    Downloads: 0 This Week
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    NetlistViewer

    NetlistViewer

    SPICE netlist visualizer

    Please go to https://github.com/f18m/netlist-viewer for most updated code
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    Downloads: 15 This Week
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  • 6
    An easy-to-use tool, to foster a model driven architecture.
    Downloads: 0 This Week
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  • 7
    Accord.NET Framework

    Accord.NET Framework

    Scientific computing, machine learning and computer vision for .NET

    The Accord.NET Framework provides machine learning, mathematics, statistics, computer vision, computer audition, and several scientific computing related methods and techniques to .NET. The project is compatible with the .NET Framework. NET Standard, .NET Core, and Mono.
    Downloads: 2 This Week
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  • 8
    EFO

    EFO

    The Experimental Factor Ontology describing experimental variables

    *** Please note this repository is now deprecated as of January 2018. All EFO development and source code has been moved to https://github.com/EBISPOT/efo *** The Experimental Factor Ontology (EFO) available from http://www.ebi.ac.uk/efo is an application focused ontology modeling the experimental factors in ArrayExpress and constructing mappings to multiple existing domain specific ontologies. To submit new terms, features or report bugs please submit a ticket at the following: http://www.ebi.ac.uk/panda/jira/secure/CreateIssue!...
    Downloads: 0 This Week
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  • 9
    Weather-Forecast

    Weather-Forecast

    Weather Forecast is a simple app that shows you a weather.

    ...The features include the basics, including forecasts, current temperature, hourly forecasts, and more. Other than that, it's really not all that complicated. It's free to download with no in-app purchases and the source code available. The weather app supports global locations and has customizable Live Tile support. It is a nice option for the times you just need to check in on the weather to plan for your week ahead, your weekend plans or any other times when the weather could play a factor. This Weather app has a host of updates since released, with a few new features added to the mix. ...
    Downloads: 0 This Week
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  • 10
    This is an implementation of post-process phonon analyzer, which calculates crystal phonon properties from input information calculated by external codes, e.g., first-principles calculation code.
    Downloads: 4 This Week
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  • 11

    FORTRAN Unit Test Framework (FRUIT)

    FORTRAN Unit Test Framework FRUIT - TDD in FORTRAN

    FORTRAN Unit Test Framework, written in FORTRAN 95. So that all FORTRAN features can be tested. FRUIT has assertion, fixture, setup, teardown, report, spec, driver generation. Rake used as build tool. Tutorials at http://fortranxunit.wiki.sourceforge.net The core testing part is in FORTRAN, this part can be used independent of the Ruby codes. The Ruby code is to make fixtures and reports easier. Rake is to build the project elegantly. This project also demonstrate a new way to...
    Downloads: 1 This Week
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  • 12
    FreeMat
    Freemat is an interpreted, matrix-oriented development environment for engineering and scientific applications, similar to the commercial package MATLAB. Freemat provides visualization, image manipulation, and plotting as well as parallel programming.
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    Downloads: 134 This Week
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  • 13
    Scripted Roulette

    Scripted Roulette

    Simulation tool for the casino game Roulette

    Scripted Roulette is an original application which helps you to develop and analyze new betting strategies for the casino game Roulette. Learn and understand more about the chances you really have to win.
    Downloads: 1 This Week
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  • 14
    This is a very simple OpenGL visualization library with a 3D and 4D volume renderer. It can easily be reused in other projects (e.g. with medical volumes). It is just perfect for learning or great if you like to hack your own code.
    Downloads: 0 This Week
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  • 15

    Common Lisp Wrapper for Proj

    CFFI glue code to use Proj.4 library in Lisp

    CFFI glue and bindings for the Proj.4 library to provide a wealth of geographical projections in Common Lisp environment. PROJ.4 is a Cartographic Projections library originally written by Gerald Evenden then of the USGS. CL-PROJ provides complete bindings for this library.
    Downloads: 0 This Week
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  • 16
    BioFVM

    BioFVM

    3-D diffusion solver for biological problems

    BioFVM is an open source diffusive transport solver for biological problems. It can solve for the diffusion of tens or hundreds of substrates on large 3-D domains. For simplicity, the code has minimal external dependencies. BioFVM was first published in: A. Ghaffarizadeh, S.H. Friedman, and P. Macklin. BioFVM: an efficient, parallelized diffusive transport solver for 3-D biological simulations.
    Downloads: 0 This Week
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  • 17
    Jillion
    Java bio-informatics library to analyze and convert genomic sequence and assembly data. This library was created and used by the J. Craig Venter Institute (JCVI)
    Downloads: 0 This Week
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  • 18

    pyGerber2Gcode

    Python Gerber to G-code converter

    pyGerber2Gcode is a Pyhon based simple Gerber to G-code converter.
    Downloads: 4 This Week
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  • 19
    EPICS Qt Framework

    EPICS Qt Framework

    Qt based GUI system for use on EPICS control systems. (Now on GitHub)

    (Now mantained on GitHub - https://qtepics.github.io/) A layered framework based on Qt for accessing Experimental Physics and Industrial Control System (EPICS) data using Channel Access (CA). Designed for rapid development of control system graphical interfaces. Initially developed by Glenn Jackson, Anthony Owen, and Andrew Rhyder at the Australian Synchrotron. Later, Andrew Starritt and Ricardo Fernandes joined the development team.
    Downloads: 3 This Week
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  • 20
    FormRead

    FormRead

    Free OMR - OCR web sofware based on javascript and PHP

    https://formread.org FormRead is a completely free OMR (optical mark recognition) web software for scanning and grading user-filled, multiple choice forms. Create your formats with any of your office or drawing tools, scan them and parameterize their coordinates in an easy way. Once you have parameterized your form, you can print many of them, give it to your students/respondents, scan and recognize them with formread, and you can finally export the data in your preferred formats...
    Downloads: 3 This Week
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  • 21
    MYRA

    MYRA

    A collection of ACO algorithms for the data mining classification task

    MYRA is a collection of Ant Colony Optimization (ACO) algorithms for the data mining classification task. It includes popular rule induction and decision tree induction algorithms. The algorithms are ready to be used from the command line or can be easily called from your own Java code. They are build using a modular architecture, so they can be easily extended to incorporate different procedures and/or use different parameter values. This project is now hosted at: https://github.com/febo/myra
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    Downloads: 2 This Week
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  • 22
    Speakable Programming for Every Language

    Speakable Programming for Every Language

    Your language to speak with all.

    This project has the language data for spel, the main new codebase is at: https://gitlab.com/liberit/pyac A computer programming language using human language syntax for human-to-human and human-to-computer communication with high precision, supporting many languages. Currently has alpha prototype support for analytic versions of the UN languages English, Mandarin Chinese, Spanish, Arabic, Russian...
    Downloads: 1 This Week
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  • 23
    GTK+ IOStream

    GTK+ IOStream

    GTK+iostream, Data plots, ORB, Neural Networks, WSOLA

    Create GTK+ interfaces using IOStream style code. Its simple and quick! Also providing simple data plotting (similar to Matlab/Octave), ORB (Object Request Broker), and Neural Network computations. You can create GTK+ GUIs in a few lines of code. Labels<<"Thanks for reading"; (HBox<<Labels).show(); or even one line : (HBox() << (Labels()<<"Thanks for reading")).show(); Inline code destructs the classes, but leaves the widgets/callbacks operating. This is great for embedded...
    Downloads: 0 This Week
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  • 24
    NOTE: Use of this codebase is NOT RECOMMENDED. This project has been migrated to github at http://jaerproject.net (or https://github.com/SensorsINI/jaer for the Java code). Commits have been disabled for the subversion sourceforge repository and new development is being done on the github repository. Java tools for Address-Event Representation (AER) neuromorphic processing. Uses USB hardware. See wiki at https://sourceforge.net/p/jaer/wiki/
    Downloads: 0 This Week
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  • 25
    Gnuplot Editor

    Gnuplot Editor

    Interactive gnuplot script editor

    Ever needed to tweak a gnuplot script and got annoyed by constantly changing the script file, run gnuplot and display the resulting image? The gnuplot editor generates a preview of the plot for every change you make and quickly allows to show the created image file with a simple keystroke. Lines with errors are highlighted in the code and gnuplot output is shown in a separate widget. In addition it features all basic editor options, syntax highlighting and menu macros for often used...
    Downloads: 0 This Week
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