Search Results for ".java" - Page 17
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Showing 4337 open source projects for ".java"
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GMOL
A tool for 3D genome structure visualization
GMOL is an application designed to visualize genome structure in 3D. It allows users to view the genome structure at multiple scales, including: global, chromosome, loci, fiber, nucleosome, and nucleotide. This software was built upon the pre-existing Jmol package by Prof. Cheng's group. The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. The project... -
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DrawWKT
View your WKT geometries
Small and powerful! Write one or several WKT geometries on the text box, and visualize them in a click. Alternatively, draw the geometries in the drawing panel and you will have the WKT in the text box. You can also write your geometry readers and import your geometries in any format. -
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DACO-algorithm
A novel transcription factor complex prediction algorithm.
Eukaryotic gene expression is controlled through molecular logic circuits that combine regulatory signals of many different factors. Complexation of transcription factors and other regulatory proteins is a prevailing and highly conserved mechanism of signal integration within critical regulatory pathways and enable to infer controlled genes as well as the exerted regulatory mechanism. We developed DACO (domain-aware cohesiveness optimization), a novel algorithm that combines... -
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A genome wide mapping data interpretation platform for NGS(ChIPSeq). A tutorial can be found at: http://genomeast.igbmc.fr/wiki/doku.php?id=training:seqminer
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Your monitoring isn't a stack. It's a pile. Fix that.Replace Datadog, New Relic, and Sentry without adding three more dashboards.
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PatientKAPRecords
KAP evaluation and patient records in radiodiagnostic
This program tries to help radiologists to keep track of patients which receive radiation doses (measured, or computed, free in air) from radiodiagnostic examinations. It performs computation of KAP (kerma-area-product if it is not recorded by a dedicated DAP-meter) and record the patient information. The program also generates elegant reports which can be converted as pdf, xls etc. Source code included in jar files. Also, available on GitHub: https://github.com/ZiliasTheSaint/PatientRxRecord.git -
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mirplant
miRPlant: An Integrated Tool for Identification of Plant miRNA
please cite: An J, Lai J, Sajjanhar A, Lehman ML, Nelson CC: miRPlant: an integrated tool for identification of plant miRNA from RNA sequencing data. BMC bioinformatics 2014, 15(1):275. We will create index for you if you tell us your interested plants (j.an@qut.edu.au). -
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JBotSim is a multipurpose dynamic network simulator that allows to quickly prototype a distributed algorithm and test its behavior on a set of static or mobile nodes. If mobile, the nodes can be controlled by the mouse or by program.
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...Since the EvolutionStream implements the Java Stream interface, it works smoothly with the rest of the Java Stream API. Other repositories: - https://github.com/jenetics/jenetics Maven: - https://mvnrepository.com/artifact/io.jenetics
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X-RIME is a open source project devoted to provide Hadoop based solution for large scale social network analysis.
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Effectopedia is open knowledge aggregation and collaboration tool that provides a means of describing adverse outcome pathways in encyclopedic manner.
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Mavscript
Calculations in a text document
Mavscript allows the user to do calculations in a text document. Plain text, LaTeX and OpenOffice Writer files (.odt) are supported. The calculation is done by the algebra system Yacas (default), Jasymca or by the Java interpreter BeanShell. -
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Fudaa
https://gitlab.com/fudaa
Official site: https://fudaa-project.atlassian.net/wiki/spaces/FUDAA/overview Sources moved to GitLab: https://gitlab.com/fudaa -
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SMSD
SMSD is a Java based software library for calculating MCS.
SMSD is a Java based software library for calculating Maximum Common Subgraph (MCS) between small molecules. This will help us to find similarity/distance between two molecules. MCS is also used for screening drug like compounds by hitting molecules, which share common subgraph (substructure). -
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OpenStreetMap Website Viewer
Shows local Websites from OpenStreetMap
The OSM Website Viewer shows a Map. With + and - Button you zoom in and out. Clicking on the Map moves the clicked Point to the middle of the Map. The @ Button open your Browser an show a List of local Websites -
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JLibModbus - Java Modbus Library
A modbus library implemented in Java.
JLibModbus is an implementation of the Modbus protocol v1.1b in java language. The library supports the most popular communication libraries (jssc, rxtx, jSerialComm, purejavacomm, java comm api); Maven dependency: <dependency> <groupId>com.intelligt.modbus</groupId> <artifactId>jlibmodbus</artifactId> <version>1.2.9.7</version> </dependency> Implemented MODBUS functions: 0x01 Read Coils 0x02 Read Discrete Inputs 0x03 Read Holding Registers 0x04 Read Input Registers 0x05 Write Single Coil 0x06 Write Single Register 0x07 Read Exception Status 0x08 Diagnostics 0x0B Get Comm Event Counter 0x0C Get Comm Event Log 0x0F Write Multiple Coils 0x10 Write Multiple Registers 0x11 Report Slave Id 0x14 Read File Record 0x15 Write File Record 0x16 Mask Write Register 0x17 Read Write Multiple Registers 0x18 Read Fifo Queue 0x2B Encapsulated Interface Transport (Read Device Identification interface) -
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Active Intelligence Server
Reporting, Dashboarding, Analytic, Self-service BI, Ad-hoc reporting
Active Intelligence Server 2 (AIS) is a data visualization tool and fully featured reporting server which enable users from open source community to host any reports created using BIRT, Jasper and Pentaho community edition allowing organization to leverage open source technologies and enable them to use AIS as a reporting server to deploy their existing and new reports seamlessly onto AIS for secure sharing the information in different file formats and schedule to make system automation and... -
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RadiationHelper
Alpha, Beta, Gamma measurements and Nuclide exposure
RadiationHelper is a data analysis tool for : 1. gross alpha and beta radiation measurement and detector calibration using experimental data (counts acquired by alpha-beta devices). 2. gamma spectroscopy measurements and detector calibration using experimental data (spectra acquired by acquisition software such as Assayer, Gamma Vision, Maestro) 3. gross alpha,beta, gamma detector efficiencies and gamma peak efficiency can be theoretical computed using Monte-Carlo simulation technique for radiation transport (based on EGSnrc toolkit) 4.dose assessment in human body exposed to radiations from nuclides in several common scenarios such as air exposure, water submersion, ground surface, internal ingestion or inhalation. 5. quick dosimetry and shielding computations. It is platform independent (written entirely in Java). Source code included in jar files! Also, available on GitHub: https://github.com/ZiliasTheSaint/RadiationHelper.git Checkout for dependent modules! -
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BEAST
BEAST is a tool dedicated to assess political goals of woody bioenergy
The BioEnergy Allocation and Simulation Tool (BEAST) is a tool dedicated to assess political goals of woody bioenergy production in the context of available biomass potentials and corresponding economic and ecological criteria on a regional level. It is a useful tool in participative decision making processes by iterative simulation and visualization of complex issues. BEAST is a data- and model-driven Decision Support System (DSS) evaluating woody biomass potentials from forests, hedges... -
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The Sceptics Global Warming Analyzer
Data Analyzer for Global Warming Sceptics
A basic tool for importing, parsing, exporting, and analyzing the GHCN Weather Station Data. -
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aioulinux
Linux for Arduino and Makers developers
Hello, I'm the Aioulinux founder, eager to professionally revive the project. Since 2018, the demand for an IoT and Arduino-tailored environment has been evident. Seeking partners for a 2024 version targeting schools and IoT companies, aiming for a secure and comprehensive platform. If you share this vision and wish to collaborate, reach out. Let's revive Aioulinux stronger than ever! Now seeking partners: Live Distro Specialist: Expert in live distributions to ensure... -
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Digital Logic Simulator (DiLoSim)
Allows you to build your own circuits and test them
With this software you will be able to build your own circuits and test them. You are allowed to use this easy-to-use tool for educational reasons. Run on Windows: - Install Java: https://java.com/en/download/ - Download the binaries - Open the jar-file with the java runtime Limitations: - Currently only German language supported. - This software requires Java 8 or above to work. Tested with OpenJDK & Oracle Java. For more information check out the project's source code at https://github.com/Crusader99/digital-logic-simulator -
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TIM
A raytracer for forbidden optics
*** TIM's (now Dr TIM's) source code has moved to https://github.com/jkcuk/Dr-TIM *** TIM is a raytracer that was originally developed to simulate optical components called METATOYs, but it has since then developed into something much more general. Amongst other things, TIM can also calculate random-dot stereograms and anaglyphs and visualise ray trajectories. -
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dvkit
Eclipse-based IDE for design verification tasks
DVKit provides an Eclipse-based integrated development environment (IDE) for common design-verification tasks, such as developing SystemVerilog, C++, TCL, Python, and shell code -
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SportsTimer
GUI tool to manage timer/round based sport events
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FlexibleParser_Java
Group of multi-purpose Java-converted-from-C# parsing libraries.
FlexibleParser (Java) is currently formed by the following independent libraries/parts: - UnitParser. It allows to easily deal with a wide variety of situations involving units of measurement. - NumberParser. It provides a common framework for all the .NET numeric types. AUTHORSHIP & COPYRIGHT I, Alvaro Carballo Garcia (varocarbas), am the sole author of each single bit of this code.
