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ProteinShop is an interactive protein manipulation tool. Users apply their knowledge and intuition to quickly create a set of protein configurations that can be subjected to local or global optimization. More information at http://proteinshop.org
Open Services Dash project initiated by me. Explanation of the project is found here: http://www.mp3car.com/vbulletin/osdash-open-services-dash-project/138051-what-osdash-project.html
lib_3d_mec_ginac is a library for symbolic multibody system dynamics. It can be used standalone, although it will be the kernel substitute of future version 3.0 of 3d_mec (http://www.imac.unavarra.es/3d_mec).
General numerical simulation software in C++. Provides a basic and very general library to automate simulation housekeeping details such as configuration file managment. Utilities and examples are also planned. [[WE HAVE MOVED TO GITHUB http://github.com/tgrigera/glsim ]]
Project migrated: https://github.com/arktools
This library aims at providing a uniform method for simulation, prototyping, and testing of autonomous robots. It also adheres to the object-oriented paradigm to ease system configuration and development. http://www.youtube.com/watch?v=-wQVrM5SL2o&fe
This software is developed by Kalidas (http://openwetware.org/wiki/Kalidas_Y) as part of his Ph.D. thesis. The method enables alignment of ligand molecules considered molecular graphs. It is useful in the domain of drug discovery and bioinformatics.
GPUmat User Modules are extensions for the Matlab Toolbox GPUmat (http://gp-you.org). The purpose is to enable users to add new features to GPUmat and to develop GPU applications on Matlab. Wiki: http://sourceforge.net/apps/mediawiki/gpumatmodules/
Skittle is a 2D visualization of genome sequence files. The program assigns four colors to the four nucleotides and text wraps the sequence to create a 2D picture based on the DNA sequence. Great for researching tandem repeats and chromosome structure.
Compiled downloads available at http://dnaskittle.com/
Source maintained at https://github.com/josiahseaman/skittle
PocketDepth helps determine binding grooves for protein molecules. Applicable in Bioinformatics and Drug discovery.
Literature - http://www.ncbi.nlm.nih.gov/pubmed/17949996
Author's thesis - http://openwetware.org/wiki/Kalidas_Y
gnplib is a library that provides functions to simulate network delays using Global Network Positioning. It is based on PeerfactSim (http://sourceforge.net/projects/peerfactsim/) developed at Technische Universität Darmstadt.
Software application, firmware and U.I. for 4-motors 3-axis milling machine, open hardware, software and mechanics. See also project in details for schematics and images on http://www.contesti.eu/opensource/xyz-dc-motor-controller
MGFp is open parser implementation for the Mascot Generic Format (MGF). It uses bison/flex to define a formal grammar and provides the necessary C++ adapter classes. The software is provided under a BSD license.
Development on SF.net has ceased. You can find the project at http://kirchnerlab.github.com/libmgf/
The software contains a set of algorithms to control the mobile robot called volksbot. Wiki: http://sourceforge.net/apps/mediawiki/openvolksbot/index.php?title=Main_Page
Molecular Graphics and Dynamics. Molecular model builder. Part of the Ascalaph Designer http://sourceforge.net/projects/asc-designer/ project. Windows & Linux.
Implementation of the PowerWatershed algorithm (q=2) described in the following paper (ICCV 2009)
http://www.esiee.fr/~najmanl/papers/couprie2009iccv.pdf
ROS repository for human-robot engagement package, developed at Worcester Polytechnic Institute. Currently contains ROS stack for recognizing and generating connection events. This work is supported by the NSF awards IIS-0811942 and IIS-1012083.
Jitterbit is an open source integration tool that delivers a quick and simple way to design, configure, test, and deploy integration solutions. It supports many document types and protocols: XML, web services, database, LDAP, text, FTP, HTTP(S), file
WARNING: rgdal is only available for download from CRAN - this repository no longer used for development. NEVER use the very out of date file bundles for download from this site!!! See http://cran.r-project.org/web/packages/rgdal/index.html.
WONDER is a software suite for using Wave Field Synthesis and Binaural Synthesis. It's primary platform is Linux, but it can be used under OSX too. Documentation is available at: http://swonder.wiki.sourceforge.net