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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
MetaErg is a stand-alone and fully automated metagenome and metaproteome annotation pipeline published at: https://www.frontiersin.org/articles/10.3389/fgene.2019.00999/full.
If you are using this pipeline for your work, please cite:
Dong X and Strous M (2019) An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs. Front. Genet. 10:999. doi: 10.3389/fgene.2019.00999
The instructions on configuring and running the MetaErg pipeline is available at GitHub...
Zocalo is a toolkit for building Prediction Markets, markets in securities that pay out depending on outcomes of future events. A prediction market can provide estimates of the likelihood of specific outcomes that are more reliable than other sources of