Search Results for "general morphological analysis"
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Showing 68 open source projects for "general morphological analysis"
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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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matgts
programs for geotechnical engineering and mathematics
Sour*eforge.net has become inaccesible to me because of Cl*udflare. The latest versions of the programs will be on my site: https://matei.one/. mtfem - finite element analysis, 2D, plane strain state (C, SDL), GNU/Linux and Wind0ws executables present; mtpile - analysis of a laterally loaded pile (C, SDL); mtslope - slope stability and displacement analysis using limit equilibrium (C,SDL); jswall - analysis of a diaphragm wall (JavaScript); jsmath - mathematics: polynomial... -
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Crossref Author Check
Web app to cross-check publication/authorship against CrossRef
This tool retrieves CrossRef information on article type, authorship, print date, subject area, etc. for publications specified by DOI and/or PubMed IDs (max. 100). The tool also tallies the order of authorship for a specified author. -
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QUAST
Quality Assessment Tool for Genome Assemblies
QUAST performs fast and convenient quality evaluation and comparison of genome assemblies. It is maintained by the Gurevich lab at HIPS (https://helmholtz-hips.de/en/hmsb). For the most up-to-date description, please visit http://quast.sf.net. Below are just some highlights. QUAST computes several well-known metrics, including contig accuracy, the number of genes discovered, N50, and others, as well as introducing new ones, like NA50 (see details in the paper and manual). A... -
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QXRD is software for the acquisition and analysis of X-ray data taken with 2 dimensional detectors. The software can drive a Perkin Elmer XRD series flat panel detector and can be remote-controlled via a socket interface, or directly from SPEC
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AlphaPlot
Interactive scientific graphing and data analysis software.
Alpha Plot can generate different types of 2D and 3D plots (such as line, scatter, bar, pie, and surface plots) from data that is either imported from ASCII files, entered by hand, or calculated using formulas. The data is held in spreadsheets which are referred to as tables with column-based data (typically X and Y values for 2D plots) or matrices (for 3D plots). The spreadsheets as well as graphs and note windows are gathered in a project and can be organized using folders. The built-in... -
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gsasnp2
PubMed ID: 29562348 / DOI: 10.1093/nar/gky175
* GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data... -
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JavoueJapasse_gl02
LOGICIEL D'ANALYSE D'EMAILS
Vous souhaitez analyser un programme permettant d'analyser simplement et efficacement tous vos emails ? Bienvenue chez JavoueJapasse ! Le cabinet de conseil UIConsult souhaite se doter d'un outil d'aide à l'analyse des communications et des expertises à l'intérieur de ses équipes de collaborateurs. L'enjeu est pour les responsables de secteur de pouvoir produire un rapport d'analyse des échanges par emails des collaborateurs, appelé "RCom". Ces rapport sont réalisés à l'échelle... -
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Xplico
Xplico is a Network Forensic Analysis Tool (NFAT)
Xplico is a Network Forensic Analysis Tool (NFAT). The goal of Xplico is extract from an internet traffic capture the applications data contained. For example, from a pcap file Xplico extracts each email (POP, IMAP, and SMTP protocols), all HTTP contents, each VoIP call (SIP, MGCP, MEGACO, RTP), IRC, WhatsApp... Xplico is able to classify more than 140 (application) protocols. Xplico cam be used as sniffer-decoder if used in "live mode" or in conjunction with netsniff-ng. Xplico is used... -
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TreeGraph
Information Manager(split/analyze/compare/combine).
For Homepage, Blog, Family Tree, Database, C#|hjt|js|chm Editor. Convert hjt2xml, (c#)cs2xml, chm2xml, js2xml, xml2cs, xml2js, xml2hjt, cs2hjt, hjt2cs, cs2chm, hjt2chm. IE/Opera/Firefox/PocketPC supported. -
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dadosSemiotica
Collecter and manager of semiotica annalisis data
This program is a web application to collect and organize data of text analysis. It works with sets of texts and the analysis are done on portions of the length of a sentence. One of the preprocessing modules is based on CoGroo (A LibreOffice & OpenOffice.org Portuguese Grammar Checker). -
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The main purpose of CombiTagger is to read files generated by individual PoS taggers and use them to develop and evaluate combined taggers according to a given combination algorithm. http://aaai.org/ocs/index.php/FLAIRS/2009/paper/download/67/296
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BioRec:Bird Census field data annotation
Recognizing biological data from a notebook.
This project helps to digitize field data for a certain Bird Census method. Namely, bird census based on personal inspection or small (~10 km^2) regions with recording birds' position and behaviour on paper. This project makes it easy to annotate such field data and to make this data available for statistical analysis. -
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FormRead
Free OMR - OCR web sofware based on javascript and PHP
https://formread.org FormRead is a completely free OMR (optical mark recognition) web software for scanning and grading user-filled, multiple choice forms. Create your formats with any of your office or drawing tools, scan them and parameterize their coordinates in an easy way. Once you have parameterized your form, you can print many of them, give it to your students/respondents, scan and recognize them with formread, and you can finally export the data in your preferred formats... -
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AXYZ
Newsfeed aggregator
The article explains the design and the characteristics of a new open source content aggregation system. Among the features of the program, stands out a new processing engine of syndication channels, monitoring capability of information recovery in real time, the possibilities of the configuration of aggregator behavior, automatic classification of contents and new models for representation of information from relational interactive maps. On the other hand, the aggregation program, which... -
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easyrec is a recommender system that aims for easy integration of recommendations into web applications. It has a web based admin tool, and its recommendation engine is accessible through a REST API, providing methods like 'other users also bought'
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Acacia
A generic biodiversity database management system
An interactive data entry, querying, and editing system based on a generic conceptual schema for taxonomic databases. It combines the automated use of scientific names and synonyms in a species checklist with online access to geographical data and common knowledge data (morphological descriptors, genomics, ecology, vernacular names, economic uses, structured notes and conservation status) about the species. All these data can be cross-indexed to a citation list. The design and standard... -
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openMEDIS
open source medical device information system
OpenMEDIS is a simple, flexible, and standardized tool to collect (inventory) and process (manage) information on health technology infrastructure, e.g. medical devices in low- and middle income countries. The latest source code is available in the folder Code/trunk. There are also sub-projects of openMEDIS that contain the source-code of installations in each country. -
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oasis-genomics
Oasis Genomics cancer omics integration portal
OASIS is an application that enables complex analytical queries across somatic mutations; copy number changes (CNV); and gene expression data. OASIS has been built on top of the BIoMart frameworks and has been extended to incorporate unique tools and visualizations to facilitate analysis of complex cancer "Omics" datasets. -
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Travel Market Simulator
Travel Market Simulator
That project aims at studying the impact of IT systems interactions on traveller demand and airline revenues. Passenger demand is generated (Monte Carlo) and injected into simulated CRS and airline IT systems. Differential analysis is then performed on various changes compared to a bottom line scenario. -
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e-Science Central
Cloud based scientific data analysis
e-Science Central has moved to BitBucket, please visit: https://bitbucket.org/digitalinstitute/esciencecentral/ -
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Digital Expression on the Web
DEW is a platform that allows users to explore RNA-Seq data
DEW is a platform that allows users to explore RNA-Seq data. A web-based Graphical User Interface is included. The analysis proceeds as such: gapped alignments are performed and corrected for length, PCR and fragment bias so that a Fragment Per (effective) Kilobase per Million of reads (FPKM) is estimated as well as the simpler Reads Per Kb per Million of reads (RPKM). When provided with multiple isoforms and in the ‘contextual’ mode, corrections include a expectation maximization... -
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Pathomx
Workflow-based data analysis built on IPython
Pathomx is a workflow-based tool for the analysis and visualisation of experimental data. Initially created as a tool for metabolomic data analysis is has been extended and can now be used for any scientific and non-scientific data analysis. -
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wEMBOSS is a Web interface for the EMBOSS software package for biological sequence analysis. Under wEMBOSS each user has a private workspace (UNIX home directory) on the server, where he can permanently store his data and organize them in projects. The companion suite wrappers4EMBOSS allows to integrate under EMBOSS a number of popular bioinformatic software suites as BLAST, CLUSTAL and MRS.
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