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This ohnlp project has released "pipelines" that were contributed by members of the OHNLP Consortium. The pipelines are based on the Apache UIMA framework.
medKAT/P, MedCoref, MedTagger, MedXN, and cTAKES are licensed under Apache License V2.0.
MedTime is licensed under GNU General Public License version 3.0 (GPLv3).
cTAKES development has moved to apache.org.
See http://ctakes.apache.org/
The Systems Biology Ontologyproject (SBO) goal is to develop controlled vocabularies and ontologies tailored specifically for the kinds of problems being faced in Systems Biology, especially in the context of computational modeling.
!!!! Important Announcement !!!!
We have moved the curation and development of Systems Biology Ontology (SBO) to a git-hub repository https://github.com/EBI-BioModels/SBO.
Composer for OWL-S-based Semantic Web Services that can load SWRL-based Semantic Bridges to mediate between heterogeneous ontology concepts. Exports semantic. enh. BPEL code. Dependency to BerliOS-project: "sembpelext". Also see QualiPSo.org for details.
The purpose of this project is to develop ontology-based tools for the study of animal behavior (ethology). The goal is not to produce a general ontology or editor, but comparative methods
and (behavior) data entry tools (ethontos and owlwatcher).
This Java project creates a testing environment application to analyze an image at its low level features and suggest tags to clasify it using an ontology search based on the tags of similar images.
The metabolomics standards initiative (msi) will develop a Core Information for Metabolomics Reporting (CIMR) recommendation and a more formal and semantically defined corresponding ontology (msi-ontology).
Adaptive Work-Centered User Interface Technology (ACUITy) utilizes semantic technology in an ontology-based approach to modeling and implementing intelligent user interfaces.
** IMPORTANT NOTICE ** 10 Feb 2006 Code is being moved to the SMI subversion repository (http://smi-protege.stanford.edu/svn/owl/trunk/) Project will continue to be open source. ProtegeOWL info at: http://protege.stanford.edu/overview/protege-owl.html
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The RNA Ontology Consortium proposed a translation the RNA backbone angles to 46 clusters ('suites') and hence unique names. This project calculates the suites from RNA 3D structures, and to search on a Java-based index structure of known folds.
The OpenOGI project is an open source library to integrate heterogeneous and distributed geographic objects (features) based on ontology and OGC WFS specification. This library is an open academic tool.