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Find sequence-specific stem-loops in FASTA and GenBank files.
LoopMatcher is a bioinformatics tool that searches for hairpin structures in cDNA / mRNA sequences (in FASTA, GenBank or Vienna format) with specific consensus sequences in the loop. It uses RNAfold to predict sequence structure and UShuffle to generate random sequences with a defined k nucleotide frequency. Also, sequences in GenBank format can be downloaded directly from NCBI using the NCBI access ID.
Requirements
JAVA Runtime 8. It's highly recommended to have a multicore processor...
A HP41CV simulator for the Android platform. This version is the second beta release and includes nearly all functionality of the HP41CV including running programmes. Programmes can be imported / exported on csv format. A simple programme editor incl
CoffeeTables is a high-performance, large-scale scientific data storage and retrieval Java library. CoffeeTables supports multiple storage backends, including CSV and HDF5.