Showing 36 open source projects for "java dev tool program"

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  • 1

    Dynamics Explorer

    Dynamical systems research tool

    Dynamics Explorer, (detool for short), is a program designed to let users explore dynamical systems, particularly focused on enabling mathematicians to improve the efficiency and quality of their research in the field of complex dynamics.
    Downloads: 5 This Week
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  • 2
    Jljp

    Jljp

    Calculates the voltage across a liquid junction between two solutions

    An analogous project written in C# can be found here: https://github.com/swharden/JLJP Liquid junction potential calculator. It's a tool for scientists and engineers who have to do with electrochemistry and electrokinetics. When two solutions containing ions are put into contact, possibly through a porous diaphragm, a voltage develops across them. The calculation of the voltage is not trivial. The program is written in Java. Includes classes that can be included in other programs, together...
    Downloads: 0 This Week
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  • 3

    GelJ

    GelJ is a Java program for the analysis of DNA gel fingerprints images

    GelJ is a Java application designed for analysing DNA fingerprint images. GelJ is a feather-weight, user-friendly, open-source and free tool that combines the simple design of free systems with instrumental features for DNA fingerprinting that are only available on commercial tools. Some of the outstanding features of GelJ are functionality for accurate lane- and band-detection, several methods for computing migration models and generating dendrograms, comparison of banding patterns from...
    Downloads: 28 This Week
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  • 4
    FidoCadJ

    FidoCadJ

    Simple and intuitive 2D vector drawing for electronics and not only.

    A multiplatform vector drawing program with a complete library of electronic symbols. Schematics and drawings are stored in a very compact text format. There is no netlist concept behind the drawings (so no simulation, and this is a choice) but this allows a great graphical flexibility and ease of use, making FidoCadJ the perfect tool for exchange sketches in forum and newsgroup discussions with a few clicks. Drawings can be exported in several graphic formats, such as pdf. Follow...
    Downloads: 24 This Week
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  • 5

    AntibiogramJ

    AntibiogramJ is a Java program for the reading of antibiogram-images

    AntibiogramJ is a Java program for the identification, measurement and categorisation of inhibition zones in antibiogram images captured with any device that incorporates a camera (including digital cameras and mobile phones). Citing AntibiogramJ: A. Alonso, C. Domínguez, J. Heras, E. Mata, V. Pascual, C. Torres, and M. Zarazaga. AntibiogramJ: a Tool for Analysing Images from Disk Diffusion Tests. Computer Methods and Programs in Biomedicine 143:159-169. 2017. DOI: http://dx.doi.org/10.1016...
    Downloads: 5 This Week
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  • 6
    Smith Chart Calculator

    Smith Chart Calculator

    Smith Chart Calculator JAVA

    A small tool which allows all basic smith chart actions. This program was created for educational purposes. JAVA RUNTIME REQUIRED Tested on Windows. Some features may not available with other OS (e.g. copy to clipboard) GENERAL PUBLIC LICENSE There is a pdf help file online take a look in the files section. There is also a link available in the program itself.
    Downloads: 13 This Week
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  • 7
    vision2

    vision2

    Binocular vision examination using shutter glasses

    Vision2 serves as tool for ophthalmologists and other vision testing professionals. It's useful for a variety of ophthalmology testing applications related to stereo vision. It implements many of classical tests but also new types of vectographic and random dot exams. Program was created as part of diploma thesis in Wroclaw University of Technology in Poland.
    Downloads: 0 This Week
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  • 8
    Abacus
    A tool for extracting and preprocessing spectral count data for label-free quantitative proteomic analysis. This program is designed to be used with the Trans-Proteomic Pipeline (TPP).
    Downloads: 0 This Week
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  • 9

    CONMAP

    Geobody connectivity analysis tool in geosciences. New version: 2.0

    CONMAP is a console program to aid in geobody connection analysis in geosciences. It accepts input and outpts results in GEO-EAS (GSLIB) format for easy interoperability with most geoscience softwares. To get help in usage, simply run the program without arguments. CONMAP is a Java 1.7 program. Open a command prompt, go to the directory where you download CONMAP.jar and enter the command "java -jar CONMAP.jar <arguments>" (without quotation marks) to run the program. Geobody...
    Downloads: 0 This Week
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  • 10
    GESPA

    GESPA

    Accurately predicts disease association of single nucleotide mutations

    ... are associated with disease. A host of annotations are provided: orthologous and paralogous multiple sequence alignments, UCSC annotations, reports detailing conservation of a nsSNP in alignments, and links to external nsSNP and gene information such as relevant publications. GESPA is connected to a constantly updating SQL server allowing for fast data retrieval. NOTE: REQUIRES Java 1.7.0+. Port 1433 cannot be blocked by firewall, network, or antivirus program. Please cite: http://tinyurl.com/oj7p84a
    Downloads: 0 This Week
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  • 11

    HomSI

    Homozygous Stretch Identifier from next-generation sequencing data

    ... the homozygous regions and then search for the disease gene by sequencing the genes within this candidate disease loci. Recently, the advent of next generation sequencing enables the concurrent identification of homozygous regions and the detection of mutations relevant for diagnosis, using data from a single sequencing experiment. In this respect, we have developed a novel tool that identifies homozygous regions using deep sequence data. Using *.vcf files as an input file, our program identifies the majo
    Downloads: 0 This Week
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  • 12
    Matchup

    Matchup

    Bioinformatics tool for universal primers and group-specific probes

    Matchup program can be used to find universal primers and group-specific probes for DNA-based detection methods llike AFLP(Amplification fragment length polymorphism) or Microarray experiment.
    Downloads: 0 This Week
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  • 13

    RoboStopwatch

    Automation scheduler and monitor with stopwatch GUI widget.

    This program schedules, launches and monitors any Java Runnable object. Anything you can do from Java, you can schedule and monitor using this program. It includes a nifty stopwatch widget as a metaphor for measuring performance. The monitoring is done via event messages which are displayed in real time in a GUI dialog and stored in a JavaDB database. Any number of tasks (Runnables) can be launched and monitored simultaneously. The user / programmer of the API Jar designs their own...
    Downloads: 0 This Week
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  • 14

    ORIPA S

    A drawer for origami crease pattern

    ORIPA S is a drawing tool specifically designed for a origami crease pattern. It is derived from ORIPA which is developed by MITANI Jun. New features by ORIPA S are: - save current crease pattern as a image file (jpeg, png) not only original project file. - while pasting, select a point on pattern to be matched against destination point. - Some considerable bugs are fixed (i.e., wrong undo behavior on ORIPA v0.35). This program is free software: you can redistribute...
    Downloads: 2 This Week
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  • 15

    FishingCNV

    Copy number variation (CNV) detection in exome sequencing data

    FishingCNV, a software tool developed at McGill University, is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs. The program comes in 2 different releases * GUI version (FishingCNV_X.X.X.zip) * Command line version (FishingCNV_X.X_pipeline) Browse through our files to find the different releases.
    Downloads: 0 This Week
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  • 16

    Screenograma

    Screenograma is an interface automation tool with feedback.

    Screenograma is an automation tool which allows users to execute sequences of mouse and keyboard actions as well as to provide some visual and audible feedback. The original purpose of the program was to provide the means for design and execution of experimental protocol interacting with the proprietary physiological data recording software. The core functionality needed for this task is to: show instructions to the test subject, start the recording of the physiological parameter, make sound...
    Downloads: 0 This Week
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  • 17

    MiniKakofonix

    Asterix UDP multicast recorder

    This program is capable of subscribing to an UDP multicast feed containing (live) radar data in Eurocontrol Asterix format. The received UDP frames are stored in a recording file. A new (raw) Asterix recording file can be created every x minutes. The previously recorded Asterix filename contains date and timestamp. This tool can be used to do continuous 24/7 Asterix multicast recordings.
    Downloads: 0 This Week
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  • 18

    GPXReport

    Analyze gpx files and store summary in Sqlite database

    There are many good programs to manage gpx tracks from my sport activities. My favorite one is gps-prune to view gps tracks on a map and make changes. However, I was missing a simple tool to store summary information about a gpx track into a database to keep track of my training efforts. That's why I created GPXReport. GPXReport is a desktop solution which is written in Java and should run on most computers. The program can read a gpx-file and calculate basics information such as: - overall...
    Downloads: 0 This Week
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  • 19

    Seurat

    A sequence analysis tool for normal/tumor DNA and RNA data.

    THIS IS NO LONGER THE HOME FOR SEURAT. PLEASE GO TO https://sites.google.com/site/seuratsomatic/ --- Seurat is an sequence analysis program for somatic mutation and allelic imbalance discovery in paired tumor and normal genome and transcriptome data.
    Downloads: 0 This Week
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  • 20
    MoonPlanner

    MoonPlanner

    Moon calendar: shows moon's phase, signs and relatives plant's part

    MoonPlanner is a Java calendar that allow to view moon's phases, moon's signs (constellations in which the moon is), and show the part of the plant corresponding to each sign (flower, fruit, leaf or root). For every calendar's day the user can attach notes (that are stored in a persistent database). At the startup the program will remind you if there will be notes for current day. Timezones and localizations (En, IT) are supported by the application. This calendar is usable between 1900...
    Downloads: 0 This Week
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  • 21

    Galois sub-hierarchy builder

    Visualize Galois sub-hierarchy of 2d matrix

    GSH builder is a free Galois Sub-Hierarchy visualization tool. The algorithm for calculating GSH is called Pluton and the present Java realization is based on two articles. "Efficiently computing a linear extension of the sub-hierarchy of a Concept Lattice" by Anne Berry, Marianne Huchard, Ross M. McConnell, Alain Sigayret and Jeremy P. Spinrad. "Performances of Galois Sub-hierarchy-building algorithms" by Gabriela Arevalo, Anne Berry, Marianne Huchard, Guillaume Perrot...
    Downloads: 0 This Week
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  • 22
    The Harmony of the World

    The Harmony of the World

    A fair attempt at the Keplerian tradition to explore the solar system

    ... is as a tool to examine his system. With Java 2, it provides an open-source solution for listening to harmonies so generated by planetary motion. This program can run on any computer provided with a Java Virtual Machine (Rev 1.5 or greater). JAVA 2, system independent. Purpose:to encourage research in harmony in astronomy, math and music. Obstacles:math, DSP/synthesis, networks, astronomy. Features:audio, database, graphics Technologies: Telnet, .WAV audio, oggvorbis, other audio
    Downloads: 0 This Week
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  • 23
    MSA2SNP is a tool for mining SNP sites in multiple sequence alignment (MSA). This tool inherits the easy-to-use interface from MEGA4 Explorer with advance data presentation. MSA2SNP lets you visualize alignments and import from CLUSTAL program directly.
    Downloads: 0 This Week
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  • 24
    The program versusSNP is a flexible tool for mining SNPs between two close related genomes. First, we align all the orthologous genes and select SNPs, then the SNPs are separated into categories based on their mutation types.
    Downloads: 0 This Week
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  • 25
    linkFlow
    The linkFlow computer software program enables the user to perform civil hydraulic design tasks in a manner similar to a calculator. Vegetated and reinforced channels of any section can be designed using allowable shear and variable n values. c 2010
    Downloads: 1 This Week
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