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JaxoDraw is a tool to generate Feynman diagrams in a mouse click-and-drag fashion. Graphs can be exported to a variety of graphics formats and arbitrary latex code can be used for labels to produce high-quality publishing-style figures.
Barbecue is a Java library that enables the creation of barcodes in a variety of standard formats that can be displayed as Swing/AWT components, included in printed output, generated as EPS and SVG and displayed in a web application.
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737.
We will create index for you if you tell us your interested species (j.an@qut.edu.au).
download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files"
please find miRPlant in sourceforge for plant miRNA prediction.
JPIV is a platform independent, graphical stand-alone application for Particle Image Velocimetry (PIV) written in Java. PIV is an optical technique for measuring fluid flow velocities.
JPIV moved to GitHub. Please visit us at: https://eguvep.github.io/jpiv/
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cy2fluxviz : Cytoscape 2 plugin for flux distribution visualization
cy2fluxviz - Cytoscape 2 Plugin for the visualization of flux distributions in networks.
Latest releases from
https://github.com/matthiaskoenig/cy2fluxviz
A Java application for drawing dynamic mathematics features (as geometric figures, dynamic algebra) and for creating dynamic animations using geometrics tools. You can also export the figures to Latex2e pstricks, mfpic environment or JPEG, WMF, EPS image
x2svg is software to graphically lay out files like XML Schema, DTDs and Java property files as scalable vector graphics (SVG). Diagrams can be converted into PDF, PNG, TIF and EPS files directly from within x2svg. A simple GUI and ant integration exist.