Showing 17 open source projects for "count"

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  • 1
    miRDeep*

    miRDeep*

    MiRDeep*

    Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction.
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    Downloads: 1 This Week
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  • 2
    TVscript

    TVscript

    Exploration of the removal of count variable transcripts.

    > See TVscript wiki: https://sourceforge.net/p/tvscript/wiki/Home/ Related Software: 1. CStone: https://sourceforge.net/projects/cstone/ 2. CSReadGen: https://sourceforge.net/projects/csreadgen/ 3. CView: https://sourceforge.net/projects/cview/ 4. ChimSim: https://sourceforge.net/projects/chimsim/ 5. TVScript: (See wiki) 6. SeQuester: https://sourceforge.net/projects/sequester/ 7. TreeScope: https://sourceforge.net/projects/treescope/
    Downloads: 0 This Week
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  • 3
    IPCalc v1.2

    IPCalc v1.2

    This project is an IP calculator to educational usage

    A desktop application which is written in Java programming language. You can use it to educational purposes. This application by knowing the host IP address and the subnet mask can count network IP address, broadcast address and how many hosts can be at the network, Also shows binary operations.
    Downloads: 1 This Week
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  • 4
    Javaluator

    Javaluator

    A java infix evaluator based on "Shunting Yard" algorithm.

    Evaluate an arithmetic expression is as simple as: Double result = new DoubleEvaluator().evaluate("(e^3-1)*sin(pi/4)*ln(pi^2)"). But Javaluator provides you with much more ... Key features: - Functions support, including variable argument count. - Constants support: e, pi, etc ... - Variables support: Example sin(x) for x = pi/4. - Highly configurable: Reduce the built-in operator or function sets, define your own brackets. - Extensible: Define your own grammar, or extends the existing one. - Localizable: Define localized names for functions or constants. - Syntax check - Small footprint: 26kB, no additionnal library required...
    Downloads: 0 This Week
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  • 5

    mirplant

    miRPlant: An Integrated Tool for Identification of Plant miRNA

    please cite: An J, Lai J, Sajjanhar A, Lehman ML, Nelson CC: miRPlant: an integrated tool for identification of plant miRNA from RNA sequencing data. BMC bioinformatics 2014, 15(1):275. We will create index for you if you tell us your interested plants (j.an@qut.edu.au).
    Downloads: 1 This Week
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  • 6
    Abacus
    A tool for extracting and preprocessing spectral count data for label-free quantitative proteomic analysis. This program is designed to be used with the Trans-Proteomic Pipeline (TPP).
    Downloads: 0 This Week
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  • 7

    Lab Inventory

    Rediscover the Simplicity www.atgclabs.com

    Request new Lab Inventory feature or module and receive a free Single User version with new feature. Help us to improve Lab Inventory. We want to hear your feedback! https://www.atgclabs.com/products/li The Lab Inventory System is an innovative, easy to learn solution for research laboratories. You can quickly and easily upload your existing Excel based inventory and get started in minutes, manage laboratory inventory, place orders and keep track of them in one place. Lab Inventory...
    Downloads: 1 This Week
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  • 8

    jAgg

    jAgg - Java Aggregation Operations

    jAgg is a Java 5.0 API that supports “group by” operations on Lists of Java objects: aggregate operations such as count, sum, max, min, avg, and many more. It supports Super Aggregation: Rollups, Cube, and Grouping Sets. It supports analytic operations such as lag/lead and row number and more. It also allows custom aggregate and analytic operations.
    Downloads: 0 This Week
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  • 9

    CONMAP

    Geobody connectivity analysis tool in geosciences. New version: 2.0

    ...Geobody detection itself runs pretty fast, with almost all execution time spent in file loading, parsing and saving. New features in version 2.0: geobody walk, vertical transitions count and mean thickness. See details running CONMAP without arguments.
    Downloads: 0 This Week
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  • 10

    Immutable Sparse Wave Trees (WaveTree)

    Realtime bigdata tool for bit strings up to 2^63 based on AVL forest

    Realtime bigdata tool at the bit level based on immutable AVL forest which can be run in memory or, in future versions, as a merkle forest like a blockchain. Main object is a sparse bit string (Bits) that efficiently scales up to 2^63 bits normally compressed as forest has duplicated substrings. Bits objects support reading bit, byte, short, int, or long (Java primitives) at any bit index in 64 bit range. Example: instead of building a class to hold a header and then data, represent all of...
    Downloads: 0 This Week
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  • 11

    DimerRemover

    Remove adapter dimers from NGS data

    This program can be used to count or remove adapter dimers in fastq files. Using a provided adapter sequence, it generates variations of this sequence and stores them in a hash table. The reads can then be directly matched against the hash. It is far more time efficient than doing alignment.
    Downloads: 0 This Week
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  • 12
    Puran2 - Real Random Number Generator

    Puran2 - Real Random Number Generator

    Real Random Number Generator

    ...The software allow the access to the random bits like a pseudo random number generator and is easy to use. It can be mixed with random number of a tausworthe generator to grow the count of random number.
    Downloads: 0 This Week
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  • 13
    Want to count the number of syllables in a word? Want to create a random haiku? This Java application can do both. Just add the JAR file to your project for access to these basic classes. We use CMU's pronunciation dictionary to count each syllable.
    Downloads: 0 This Week
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  • 14
    Set of Ant filters that can be used to gather statistics from files or resources. It is mainly used for log files analysis. It allows to: - count inputs - count occurrences of each input - calculate average, max and min values of floats in input
    Downloads: 0 This Week
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  • 15
    NCount is a program that will do a statistical correlation count on a set of points in 1, 2, or 3-dimensions.
    Downloads: 0 This Week
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  • 16
    corrCount runs a correlation count on and graphs spacing data.
    Downloads: 0 This Week
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  • 17
    Count files and directories in a directory structure according to their file extension.
    Downloads: 0 This Week
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