Showing 157 open source projects for "computing"

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  • 1
    Advanced Trigonometry Calculator

    Advanced Trigonometry Calculator

    Open-source C/C++ math engine for advanced scientific computing

    Advanced Trigonometry Calculator (ATC) is an open-source mathematical computing engine written mainly in C/C++. Created in 2011 and maintained by Renato Alexandre dos Santos Freitas, ATC is designed as a practical Windows desktop application for advanced calculations, automation, and technical problem solving. ATC supports equation solving, polynomial tools, complex numbers, matrix calculations, statistics, physics, geometry, unit conversions, DSP/FFT operations, and scripting. ...
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    Downloads: 15 This Week
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  • 2
    In addition to computing co-expression clusters, Maccu fishes potential co-expressed genes for a given bait set. All results can be further processed via graph-level operations so that we can compare graphs based on different reference data.
    Downloads: 0 This Week
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  • 3
    java symbolic computing library and math editor, with : polynomial system solving, vectors & matrices, factorization, derivatives, integrals (rational functions), boolean algebra, simplification, MathML output, java code generation, geometric algebra
    Downloads: 0 This Week
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  • 4
    open_data_assimilation
    Generic data-assimilation toolbox written in java, with native (c and fortran) libraries for high performance computing. Provides tools to couple to your own model and a wide range of algorithms, ranging from parameter calibration to Kalman filters.
    Downloads: 0 This Week
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    GeoRegression

    An open source Java geometry library with a focus on 2D/3D space.

    Geometric Regression Library (GeoRegression) is an open source Java geometry library for scientific computing with a focus on 2D/3D space. GeoRegression provides the ability to estimate the closest point/distance between geometric primitives, best-fit shapes, and best fit geometric transform between sets of objects. It is designed for high performance and ease of use. GeoRegression has been release under an LGPL license for both commercial and non-commercial use.
    Downloads: 1 This Week
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  • 6
    JLinAlg
    JLinAlg is an open source and easy to use Java library for linear algebra. It can do calculations without rounding errors. Features include: basic matrix operations, algorithms for solving Linear Equation Systems, inverting matrices, computing the determinant and the eigenvalues of a matrix. We have moved to Github: https://github.com/JLinAlg/JLinAlg
    Downloads: 1 This Week
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  • 7
    BitLogic

    BitLogic

    Simple Java computer algebra calculator

    A calculator that solves many types of problems including solving equations computing derivatives and integrals simplifying expressions graphing equations 2d and 3d reverse polish notation, algebraic and word based interpreter infinite writing board for writing out equations requires java 11 or more
    Downloads: 1 This Week
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  • 8
    SBW (Systems Biology Workbench)

    SBW (Systems Biology Workbench)

    Framework for Systems Biology

    The Systems Biology Workbench(SBW) is a framework for application intercommunications. It uses a broker-based, distributed, message-passing architecture, supports many languages including Java, C++, Perl & Python, and runs under Linux,OSX & Win32. It comes with a large number of modules, encompassing the whole modeling cycle: creating computational models, simulating and analyzing them, visualizing the information, in order to improve the models. All using community standards, such as...
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    Downloads: 27 This Week
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  • 9
    Talend Spatial Module (aka Spatial Data Integrator or SDI) is an ETL tool for geospatial. Based on Talend Open Studio, input, output and transform geocomponents are available. IO components read/write GIS formats(eg.PostGIS, GeoRSS). Transformers all
    Downloads: 14 This Week
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  • 10

    GelJ

    GelJ is a Java program for the analysis of DNA gel fingerprints images

    ...GelJ is a feather-weight, user-friendly, open-source and free tool that combines the simple design of free systems with instrumental features for DNA fingerprinting that are only available on commercial tools. Some of the outstanding features of GelJ are functionality for accurate lane- and band-detection, several methods for computing migration models and generating dendrograms, comparison of banding patterns from different experiments, and database support. Citing GelJ: J. Heras, C. Domínguez, E. Mata, and V. Pascual. GelJ – a tool for analyzing DNA fingerprint gel images. BMC Bioinformatics 2015, 16:270 http://doi.org/10.1186/s12859-015-0703-0. You can see more information about GelJ in https://sourceforge.net/p/gelj/wiki/Home/ Several videos explaining the use of GelJ are available in https://sourceforge.net/p/gelj/wiki/Videos/ Please address any question or comment to joheras at gmail.com
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    Downloads: 46 This Week
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  • 11
    Jacksum

    Jacksum

    a free cross platform checksum utility, supports 58+ hash algorithms

    ...This site has been left for historical purposes ONLY, you find older Jacksum versions here. Please visit the GitHub site for current development. Jacksum 1.7.0 is a platform independent checksum utility (written entirely in Java) for computing and verifying (integrity check) checksums, CRC and hashes (fingerprints). It supports 58 popular hash algorithms and a lot of unique features.
    Downloads: 5 This Week
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  • 12

    MarDRe

    MapReduce-based tool to remove duplicate DNA reads

    ...Instead, MarDRe takes advantage of the MapReduce programming model to significantly improve ParDRe performance on distributed systems, especially on cloud-based infrastructures. Written in pure Java to maximize cross-platform compatibility, MarDRe is built upon the open-source Apache Hadoop project, the most popular distributed computing framework for Big Data processing.
    Downloads: 0 This Week
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  • 13

    HSRA

    Hadoop spliced read aligner for RNA-seq data

    ...This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a distributed computing framework for scalable Big Data processing. HSRA currently supports single-end and paired-end read alignments from FASTQ/FASTA datasets. Moreover, our tool uses the Hadoop Sequence Parser (HSP) library (link above) to efficiently read the input datasets stored on the Hadoop Distributed File System (HDFS), being able to process datasets compressed with Gzip and BZip2 codecs.
    Downloads: 0 This Week
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  • 14
    CloudMIG Xpress

    CloudMIG Xpress

    Find the best suited cloud provider and deployment for your software

    To reduce resource over and under-provisioning, software systems can be migrated to IaaS and PaaS-based cloud environments. However, aligning and optimizing existing software systems for a cloud computing foundation often involves substantial reengineering activities or at least an elaborated configuration during the migration. There exist various challenges that have to be addressed, for example, systematically comparing cloud environment candidates, checking the conformance with particular cloud environments, or simulating monitored workload for envisioned cloud-based target architectures to evaluate future costs. ...
    Downloads: 0 This Week
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  • 15
    Molecular Simulation Grid

    Molecular Simulation Grid

    Provides high performance computing power and state of the art tools

    MoSGrid focuses on the configuration and provision of Grid services for molecular simulations and annotation of the results with metadata and their provision for data mining and knowledge generation. It is based on Liferay technology togethe with gUSE.
    Downloads: 0 This Week
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  • 16
    CRAFT HPC Floating-point Analysis

    CRAFT HPC Floating-point Analysis

    CRAFT: Configurable Runtime Analysis for Floating-point Tuning

    CRAFT (Configurable Runtime Analysis for Floating-point Tuning) for HPC (High-Performance Computing) uses binary instrumentation to perform runtime analysis of floating-point code, detecting cancellations and making precision level recommendations. NOTE: THIS PROJECT HAS MOVED TO GITHUB!!!! https://github.com/crafthpc/craft
    Downloads: 0 This Week
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  • 17

    Animal Studies

    Animal Studies

    ...https://www.atgclabs.com/products/lp The Animal Studies module is a comprehensive and straightforward application specially designed for biologists and chemists who need to conduct a wide variety of tests and experiments on animals. Animal Studies requires minimal computing skills. Genetic and physiological data can be entered either manually or automatically when automated genotyping and analytical phenotypic assays are used. Animal Studies application is web-based and completely customizable, with Animal Studies it is very simple to create, change and distribute data flows using an iterative approach. ...
    Downloads: 0 This Week
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  • 18

    Lab Studies

    Rediscover the Simplicity http://www.atgclabs.com/

    ...https://www.atgclabs.com/products/lp The Animal Studies stores and handles three classes of information: animal growth, phenotype screening and genotype analysis. Animal Studies requires minimal computing skills. Genetic and physiological data can be entered either manually or automatically when automated genotyping and analytical phenotypic assays are used. Animal Studies application is web-based and completely customizable, with Animal Studies it is very simple to create, change and distribute data flows using an iterative approach. ...
    Downloads: 0 This Week
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  • 19

    Lab Processes

    Rediscover the Simplicity http://www.atgclabs.com/

    ...https://www.atgclabs.com/products/lp Lab Processes is a comprehensive and straightforward application specially designed for biologists and chemists who need to conduct a wide variety of tests and experiments on animals. Lab Processes requires minimal computing skills. Genetic and physiological data can be entered either manually or automatically when automated genotyping and analytical phenotypic assays are used. The Lab Processes application is web-based and completely customizable, with Animal Studies it is very simple to create, change and distribute data flows using an iterative approach. ...
    Downloads: 1 This Week
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  • 20
    MARF is a general cross-platform framework with a collection of algorithms for audio (voice, speech, and sound) and natural language text analysis and recognition along with sample applications (identification, NLP, etc.) of its use, implemented in Java.
    Downloads: 23 This Week
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  • 21

    xorlisp

    Bit level lambda continuations and nothing else - Queue automata

    Not working yet. To deal with the Halting Problem, computing and data are navigated using debugger ops: linearForward and treeForward, which navigate an astronomically large bit string where 1 is ( and 0 is ). All pairs are derived from (). For example, true is represented as ((()())()), and false is (()(()())). It appears related to the church encoding of lambda where T chooses first parameter and F chooses second, of a pair.
    Downloads: 0 This Week
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  • 22
    L-GRID
    L-GRID: a Light portal to access Grid via Web. It provides the control over the complete lifecycle of a Grid Job, from its submission and status monitoring, to the output retrieval. It is client-server application. The L-GRID server is hosted on gridui.sns.it. gridui.sns.it is GRID EGI User Interface for public access which supports "dteam","gridit","infngrid","lhcb","ops","theophys" virtual organizations. if your virtual organization is not in this VOs list, please contact us to...
    Downloads: 0 This Week
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  • 23
    Parallel Compute
    Center for Parallel Computing
    Downloads: 0 This Week
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  • 24
    xAffect

    xAffect

    Sensor Middleware

    ...xAffect can be used as a flexible, customizable middleware between physiological sensors and applications which require online feature computation (e.g. biofeedback or affective computing). Moreover, it can also be used as a standalone application for data acquisition and visualization.
    Downloads: 1 This Week
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  • 25

    Computing with units

    Calculator that takes care of measurement units.

    Java program for computations with values expressed in terms of physical or other units. Supports complicated mathematical expressions and user-defined functions. Invoked from scripts, line command, or as GUI. Extensive units data base.
    Downloads: 0 This Week
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