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Secure File Transfer for Windows with Cerberus by Redwood
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DeHinter is an enhanced file-sharing client that exploits the topology of the spontaneous communities of like-minded people to enable personalized social filtering techniques. The P2P layer is based on the Limewire Gnutella client.
OpenGGD aims to be a solution that centralizes the GPS information of a vehicle fleet, acting as an interface among different GPS devices or their control programs and different GIS programs
Now part of Apache's Mahout machine learning project at http://mahout.apache.org/-- please see there for latest info and code and releases and support!
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Tipa2Unicode is a little stand-alone application which lets you input Tipa-shortcuts and then displays Unicode symbols. You can then paste either side of the conversion to LaTeX or a word processor.
Artificial chemistry low-level simulation : make up our own rules of construction to simulate open-ended, creative evolution. See http://organicbuilder.sourceforge.net/ for more information.
With OSM Parser it is possible to process OpenStreetMap geodata for various purposes. For example, it can be used to extract streets or other OSM elements for user defined regions to generate a street directory.
DNA sequencing quality values, base calling and trace processing
Tracetuner is a tool for base and quality calling of trace files from DNA sequencing instruments. Originally developed by Paracel, a Celera Business, this code base was released as open source in 2006. TraceTuner was used by Celera to call 30+ million reads from both Drosophila and human genome sequencing projects. In 2000, Applied Biosystems bundled TraceTuner with ABI3700 Genome Analyzers and shipped it to the customers of these capillary electrophoresis sequencers. Later versions of...
Jather aims to provide an easy to use library for clustered process execution in Java. This library aims to provide a simple API and allow applications to add clustering functionality with little change to the existing code.
The main objective of the ONE project is to enrich Digital Ecosystems with an decentralised negotiation environment and enabling tools that will allow organisations to create contract agreements for supplying integrated services as a virtual organisation
E-BioFlow enables the scientists to design workflow using three different perspectives: control flow, data flow and resource perspective. The workflow tool is based on the Yawl engine and has support for BioMOBY and WSDL services and Perl and R scripts.
JColorGrid is a Java application for graphical 2D data exploration and rendering of colorgrids, a generalization of the popular heat-map representation. The software exists as a command-line application, a graphical viewer, and an API for development.
The ProM Import Framework allows to extract process enactment event logs from a set of information systems. These can be exported in the MXML format, which is the standard event log data format for Process Mining analysis techniques.
JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
Utility to translate "dvorcodes" (Dvorak keycap-encoded phrases) into their actual key values. For instance the dvorcode for "password" is "laoo,rpe". Use this tool to discover your dvorcode passwords when you must enter them on a QWERTY keyboard.
Software tools for visual psychophysics research. The focus of these tools is amblyopia research, but they can be used in some related visual neuroscience research tasks.
mzSquash is a compression tool for mzML files, an XML-based standard developed by HUPO PSI (http://www.psidev.info) for spectrometer output. All development has ceased. The tool may be useful educationally, but is not a recommended utility.
Calculating 2D-Gray-scale bitmaps Calculation of a 3D-rotation-body form a detected area by using different image processing algorithms. Developed for the German Aerospace Center (DLR). Used Projects: Substance (GUI)
A collection of applets used to demonstrate physics and math principles. The applets include: a ray diagram drawing applet, a collision of disks applet, an electromagnetic field mapper and a 3d hydrogen orbital simulation.