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JSpice is a Java Wrapper (using JNI) for the CSpice library provided by NAIF.
Goal of JSpice is to provide a full portable version of CSpice wich is used to calculate geometricals parameters of spatial mission as Cassini/Huygens.
DNAGalaxy is an attempt to produce an open-source bioinformatics software alternative to the expensive DNAStar Lasergene software. Its features currently include Blast and Entrez searching, a frontend to clustal and a sequence editor. It requires java1.5
ISAS is a configurable computer instruction set architecture simulator, written in Java, that can be used to quickly define, test and measure performance of computer instruction set architectures.
MicroArray Genome Imaging and Clustering Tool (MAGIC tool) is a platform-independant java program for analyzing MicroArray data (.tiff scans & .txt godlists) via graphs and clustering operations (including QT-clustering). http://www.bio.davidson.edu/magic
GiANT is a graphical interface for computer algebra systems (OS X/UNIX/Win). Currently GiANT lets the user work with number fields via KASH, but we aim to develop it into a GUI Library to run on top of any CAS and expose any of its functions.
Phoenix is an information extraction engine written in java.
Controlled by rules (declared in xml), it extracts information form any XML document (unstructured XHTML/OpenOffice documents). Supports XPath, additional conditions and top-down decomposit
Driver support for 3D Controller Hardware. We hope to support SDL Input, DirectInput, and other major controller API's including game consoles and embedded systems.
Alan is a Java Implenmentation of a Turing Machine for educational purpose. Features include: - Easy to use GUI - Many example Programs - ReUsable Turing Machine Component
brCluster is a class library, written in java, that implements generic clustering algorithms carefully designed to allow its aplication in any kind of data. The algorithms implemented are K-means and Hierarchical Clustering (Simple and Complete Link).
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A java class bundle with several small working applications designed to simulate and support lighter than air vehicle operation in the upper atmosphere.
This project enables a transparent integration of C/C++ and Java (and other languages such as C#, php...) in Eclipse. The project includes JQuantlib. sKWash makes use of swig. See home page for more info.
The Linear Algebra class library for Java provides a full set of tools to programmers who need linear algebra operations to use in their own projects.
Currently the library supports elementary matrix operations.
TurboGPS is a Java application giving a comprehensive solution for GPS handling. This includes easy editing, sorting and displaying (on a map) waypoints. TurboGPS supports Garmin serial devices and WGS84/RT90 Datum.
A java framework for developing meta-heuristics that supports the use of grids environments. The meta-heuristics planned to be realeased are GAs, VNS and NNs. The grid middleware that will be firstly explored is the OurGrid solution.
This is a collection of utilities and other nifty code items developed by Thought River for use in internal projects, and made available here for public use.
CloneAnalyzer is a tool for software quality analysis. It allows you to find, display and inspect clones, which are fragments of duplicated source code resulting from lack of proper reuse. It can be used as a plugin for Eclipse and on the command line.
JEDI is an academic tool developed to extract formal models (timed automta) from Java source code and annotations, acting as a front-end for several academic analysis tools.
JAligner is an open source Java implementation of the dynamic programming algorithm Smith-Waterman with Gotoh's improvement for biological local pairwise sequence alignment with the affine gap penalty model.
FeapUI gives a graphical easy-to-use interface to the fem (finite element method) programm FEAP by R.L. Taylor (www.ce.berkeley.edu/~rlt/). FeapUI runs on Linux/Unix and Windows with java. This gives you more "Feaping" and lesser maual reading.
A Java API for manipulation of GDSII stream data. It is intended to provide a useful, reusable and platform independant library for CAD/CAE application developers.
This API Requires the Java Backus-Naur Test API (JBNT). You may download it from:
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