mzSquash is a compression tool for mzML files, an XML-based standard developed by HUPO PSI (http://www.psidev.info) for spectrometer output. All development has ceased. The tool may be useful educationally, but is not a recommended utility.
ScreeningAssistant is a software based on JOELib and dedicated to the management of chemical databases. It allows the user to select a set of compounds for screening tests (High Throughput Screening or Virtual Screening).
JOELib/JOELib2 is a cheminformatics library which supports SMARTS substructure search, descriptor calculation, processing/filtering pipes, conversion of file formats, 100% pure Java, and interfaces to external programs (e.g. Ghemical) are available.
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Java GUI to analyze one (or more, in batch mode) datasets with several feature selection methods at the same time and also performing an "ensemble" analysis. It can be easily extended to include any feature selection algorithm.
Elegance, developed by Meng Xu, is a standalone Java application and facilitates the tracing of cell profile through a series of digitized electron micrographic. It is used for recontruction of nervous system of C.elegans male in wired worm lab.
In randomised controlled trials, interventions may have several components. This simple program will enable you to depict any randomised trial graphically It will standardise the construction process and ensure every step is covered. For more information
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This project is the development of a Selection Tool primarely used in ImageJ and possibly in GIMP. It is based in LiveWire and SNAKES methods and will firstly be used in IVUS (intravascular ultra sound) images.
This project aims to make open source tools for medical Studies of Diagnostic Accuracy, wich are neglected by most commom statistical tools.
Most tools will be based on the STARD.
Open Anonymizer protects sensitive data by generalizing data records in order to create data twins that mask the identity of individuals. It is based on the concept of k-anonymity .
This project is Java API to access Unicont Cardio Pager (http://unicont.ru/index2.html) device. This API allows access pager or get ECG data via serial port and through a modem line (using proprietary Windows ActiveX).
RGDicom is a Java viewer of medical images (DICOM - Digital Imaging and Communications in Medicine). It allows direct connection with the medical devices, therefore it implements DICOM 3.0 protocol and includes a lot util features, like edit the images.
The Health Manager Java SDK is an interface definition to connect wireless medical devices with a Java application. It includes also an implementation that simulates real devices and a sample application demonstrating the usage.
Xebra is an open source, cross-platform, thin client and server for web-based distribution and clinical review of medicalimaging results. Xebra is based on the latest open industry standards including JPEG2000, WADO and IHE XDS-I.
Protege is a free, open-source platform that provides a suite of tools to construct domain models and knowledge-based applications with frame-based and Semantic Web ontologies.
The Disease Simulation Framework (DiSiF) represents a spatial simulation environment for infectious viral disease spread. The framework currently embodies a very simple framework for simulation in 2D space with focus on SARS and the Common Flu.
Open Screening Environment is a open source system for management of High Throughput Screening related experiments. The platform consists of new research tools that will enhance significantly management and analysis of HTS data. More information can be f
The goal of the GeneText project is the development of a software package that will enable users to dynamically generate an information summary page from multiple sources given a search term. Fields of interest are biology, genetics and bioinformatics.