Showing 404 open source projects for "tools"

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    adLIMS

    adLIMS

    adLIMS: a Laboratory Information Management System with ADempiere

    ...We process around 1500 samples/year resulting in hundreds of millions of sequencing reads, requiring automation and posing new challenges in data storage, monitoring of sample process and computational tools for analyses. Thus we need to standardize data management and tracking systems, built on a scalable, flexible structure with an easily accessible and web based interface, what is usually called Laboratory Information Management System (LIMS).
    Downloads: 0 This Week
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  • 2

    picard

    A set of tools for working with high-throughput sequencing data

    A set of tools (in Java) for working with next generation sequencing data in the SAM/BAM format. Note that development has moved to GitHub at https://github.com/broadinstitute/picard and support is available on the GATK forum at http://gatkforums.broadinstitute.org/categories/ask-the-team
    Downloads: 4 This Week
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  • 3

    ijTools

    A set of plugins and tools for ImageJ (Image processing sofware)

    A collection of plugins and tools for the ImageJ software. Contains modules for image filtering (directional filtering), segmentation, analysis (perimeter estimation, geodesic diameter...), or visualisation (image overlay).
    Downloads: 0 This Week
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  • 4
    Agent.GUI

    Agent.GUI

    The Project moved to github https://github.com/EnFlexIT/AgentWorkbench

    The project has moved to github https://github.com/EnFlexIT/AgentWorkbench Agent.GUI is a simulation framework and toolkit based on the JADE framework. It provides functionalities for time aspects, agent-environment interaction, visualization and load balancing, Furthermore, the included application focuses the usability for end users.
    Downloads: 0 This Week
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  • 5
    The BioNLP UIMA Component Repository provides UIMA wrappers for novel and well-known 3rd-party NLP tools used in biomedical text prosessing, such as tokenizers, parsers, named entity taggers, and tools for evaluation.
    Downloads: 4 This Week
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  • 6
    DrOntoAPI
    A consumer API that can process the response of an ontology evaluation web service provider.
    Downloads: 0 This Week
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  • 7

    x2fasta

    Tools for reformatting common sequence formats into fasta

    A collection of tools to transform common biosequence formats (e.g. EMBL, SWISS-PROT, UniProtKB, GenBank and RefSeq) into the fasta sequence format.
    Downloads: 0 This Week
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  • 8
    Graphical Grammar Studio

    Graphical Grammar Studio

    An user friendly grammar tool for natural language processing tasks

    ...Graphical Grammar Studio is a tool for applying grammars which behave as words acceptors/consumers and annotators. GGS grammars can be used to find and annotate sequences of words which respect certain conditions, in a given input. Its purpose is for creating NLP tools like phrase chunkers, named entity finders, pronoun co-reference solvers etc. A grammar is represented by a state machine which can be visualized, edited and applied. A grammar is organized in graphs of nodes. Nodes are used for consuming words from the input, for executing jumps to other graphs in the grammar or for creating annotations etc. ...
    Downloads: 0 This Week
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  • 9
    PHDL

    PHDL

    An HDL alternative to PCB graphical schematic capture tools.

    PHDL is an HDL that functions as an alternative to mainstream graphical schematic capture tools. The language is compiled into a pcb netlist which can then be imported into a layout tool. We are currently on version 2.1 of the tool. We have created an eclipse plugin version of the tool as well as a standalone command-line based version. Both function identically and output a netlist that can be imported into a pcb layout tool.
    Downloads: 0 This Week
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  • 10

    TriageTools

    Tools for partitioning and prioritizing fastq data

    TriageTools is a collection of tools for partitioning raw data (fastq reads) from high-throughput sequencing projects. The tools are designed for basic data management as well for prioritizing analysis of certain subsets. The project wiki contains usage information.
    Downloads: 0 This Week
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  • 11
    JBernstein

    JBernstein

    JBernstein: Exploration techniques for non-linear constraint checking

    ...Concerning performance, the tool enables to check all examples in the PVS Bernstein testsuite within a second, which can be an order of magnitude faster than some other tools such as QEPCAD or REDLOG. Although JBernstein uses double, it offers automatic error-estimation capabilities (experimental) so that the generated result is correct (the solver may return unknown when the error-estimate is too large)
    Downloads: 0 This Week
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  • 12

    Docear

    An Academic Literature Suite

    ...It integrates everything you need to search, organize and create academic literature in a single application: a digital library, reference manager, PDF and file manager, note taking and mind mapping. And the best: Docear works seemlessly with many existing tools like Mendeley, Microsoft Word, and Foxit Reader. Docear is free and open source, based on Freeplane, funded by the German Federal Ministry of Technology and developed by scientists from around the world, among others from OvGU, and the University of California, Berkeley.
    Downloads: 0 This Week
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  • 13

    Sphinx SD Tools

    Common accessible environment for system dynamics simulation.

    The Sphinx project is dedicated to create common accessible environment for system dynamics simulation. This software is developed on Java 6 platform and use Java Swing GUI.
    Downloads: 0 This Week
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  • 14
    JinnIde is a plugin that allows using Jinni Prolog, now also hosted here on this site (with open source license!), within the confines of an IDE integrated in JEdit.
    Downloads: 0 This Week
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  • 15
    FALCON - Text Search Java Project

    FALCON - Text Search Java Project

    JSON based text search Java Project

    ...It was originally started to search the content in pdf files under the project "HAWK Search". Searching with this tool is query-based not word-based as in most of the document search tools OR document readers. It also takes care of jumbling of words within query and spelling mistakes. Commonly used techniques in this project are Natural Language Processing, Information Extraction and Question-Answering Architecture. ---------------------- - Latest Version - ---------------------- Details of latest version can be found on project website - http://geekdadaji.com --------------------------- - CONTACT DETAILS - --------------------------- CREATOR : SWAPNIL A JADHAV (saj1919) EMAIL ID : dadajibudhau@gmail.com WEBSITE : http://geekdadaji.com LICENSE : CC BY-NC 4.0
    Downloads: 0 This Week
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  • 16
    OPEN GENERAL SCIENTIFIC INTERFACES
    OPEN GENERAL SCIENTIFIC INTERFACES homepage : http://www.opengsi.org
    Downloads: 0 This Week
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  • 17

    Bermuda Text-to-Speech

    This project includes basic NLP and DSP techniques for Text-to-Speech

    See TTS demo at: http://rslp.racai.ro/index.php?page=tts This is an entirely written in JAVA project which includes a set of tools and methods designed to enable Multilingual Text-to-Speech (TTS) synthesis. We currently support English and Romanian but we will soon train more models and make them available for download. If you want to read more about our other NLP and TTS tools check out http://nlptools.racai.ro.
    Downloads: 0 This Week
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  • 18

    OpenME Interface

    simple event-based plugin interface to open up hardwired software

    News: since 2015 we continue all related developments within Collective Knowledge Framework: http://github.com/ctuning/ck/wiki Simple and universal event-based plugin framework and interface to open up hardwared black-box software (tools, application), make them interactive through external plugins, and connect them with other higher-level tools such as Collective Mind. For example, it is used to open up compilers (GCC, LLVM, Open64) for external tuning of optimization of internal heuristics, or to open up applications for online tuning and adaptation particularly on heterogeneous systems. ...
    Downloads: 0 This Week
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  • 19
    gannu

    gannu

    Java API and tools for performing NLP and other AI tasks

    Java API and tools for performing a wide range of AI tasks such as: word sense disambiguation (released), optimization (5 Evolutionary Algorithms Implemented ETA February 2014), opinion mining (ETA November 2014) and text wikification (ETA July 2014). Gannu includes some graphical interfaces for scientific purposes. When using Gannu please cite: *Jiménez, F.
    Downloads: 0 This Week
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  • 20
    Razor is a set of Java- and JOGL-based medical image tools which can be composed into a standalone application or integrated into other medical imaging applications. Via JOGL, Razor uses OpenGL to enhance and accelerate some medical imaging functions.
    Downloads: 0 This Week
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  • 21
    The metric project supplies, via the web, educational materials in mathematics and mathematics-based subjects. There are interactive explorations of mathematical ideas, self-test exercises, tools and tutorials.
    Downloads: 0 This Week
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  • 22
    The aim of the project is create a learning tools for students. If children become aware of consumption, perhaps they will be able to influence and affect a larger system of the school. Within smart energies, the goal of the monitoring system is the control and management, even remotely, ofconsumption and production of energy users are characterized by complex energy systems.
    Downloads: 0 This Week
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  • 23
    Downloads: 0 This Week
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  • 24
    Task of the project is a semantic annotation of Czech texts by using NLP tools.
    Downloads: 0 This Week
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  • 25

    SLiMScape

    A Protein Short Linear Motif Analysis Plugin for Cytoscape

    SLiMScape adds Short linear motif discovery tools to Cytoscape, transforming it into a SLiM discovery platform. A tutorial is available at the following URL: http://bioware.ucd.ie/slimscape/
    Downloads: 0 This Week
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