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jTerm is a light-weight platform independent vocabulary/terminology server. It support multiple terminologies using an abstract model. The system is provided as a J2EE deployable application supporting a web frontend for navigation of the terminologies.
Biological General Repository for Interaction Datasets (BioGRID) is a curated biological database of protein-protein interactions. It strives to provide a comprehensive resource of Protein-Protein interactions for all major species.
JGenAlg is a java toolbox for working with metaheuristic procedures (Genetic Algorithms, Island model, Particle Swarm, Ant Swarm). JGenAlg have a GUI, a Client/Server architecture, work with threads and can be use under distributed enviroments.
The aim of this project is to develop a GDSII viewer by using Java programming language. Efforts will be made especially on ease-of-use, efficiency, and capacity.
HDLObf is intended to be a HDL Obfuscator and identifier name change utility. Primarily designed for Verilog/SystemVerilog support will be added for VHDL/SystemC in future.
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Informal UI's and toolkits in Java. SATIN is a toolkit for pen-based sketching and zooming UI's. DENIM is an app for sketching an early-stage web site design. This sourceforge site is intended for continued development of these and other follow-ons.
Omnigraphs are a formal extension of hypergraphs with the ability of edges to connect to multiple nodes and edges. This project hosts the Ogre compilers.
WGAViewer is a suite of JAVA software tools that provides a user-friendly interface to annotate, visualize, and help interpret the full set of P values emerging from a whole genome association (WGA) study.
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TrypC was developed for digesting protein sequences into peptides using fully, semi, and nontryptic cleavage conditions. Associated libraries allow direct loading of data from FASTA files.
Adamant is a java application for annotation of microarray array designs. The software enables MIAME-compliant annotation of sequences spotted onto arrays and can produce output files in MAGE-ML and other data formats used by public microarray data repos
Baldr, aka Balder, is a plagiarism prevention software. Inspired by late researches in computer sciences, it’s able to compare documents using only properties linked to data compression.
Automatic Conversion Tool for Accessible Web (ACTAW) is a project that tries to improve the Web Accessibility in an automatic way. ACTAW applies the WAI guidelines 1.0 defined by the World Wide Web Consortium (W3C). Developed in Java.
Equivalence checking for two netlists of ORCAD schematic designs. Check out whether two netlists may generate the idendical PCB in later design stage, even if they are derived from different design procedures with different part-ref and siganl-name.
Wattos is a collection of mostly Java programs for Structural Biology and NMR Spectroscopy. It's programs analyze, annotate, parse, archive, and disseminate experimental NMR data deposited by authors world wide into the PDB and BMRB.