Showing 4209 open source projects for "linux is"

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  • 1
    FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.
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  • 2
    PixLib
    This library aims to provide support for D-dimensional images in Java and to enable high-level implementation of algorithms in dimensionally-invariant manner. Major features: the dimensionality and the access to primitive data types are abstracted.
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  • 3
    Virtual instrumentation software, currently designed for modifying automobile engines. Intended as a modular framework to communicate with devices on an IO port (serial, parallel etc.) and allow a visual representation of the instrument.
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  • 4
    MR-Susceptibility Artefact Measurement (SAM): An open source cross-platform toolbox
    Downloads: 1 This Week
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    Grafana: The open and composable observability platform

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  • 5
    The Diffraction Image Experiment Repository (DIMER) is an online archive for diffraction experiments, providing secure storage during analysis and publishing of experiments so they can be linked to, searched, and integrated into other databases.
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  • 6
    Conceptpower

    Conceptpower

    Conceptpower is an authority file service.

    Conceptpower is an authority file service, which is based on WordNet 3.0 (http://wordnet.princeton.edu) and can be extended as needed. Each entry in Conceptpower is identified by an URI, which should be used to refer to a particular entry. Conceptpower has three parts: a public search function, a management component, and a basic REST interface. The public search function provides the user with basic search functionality. The management component provides a simple user management, and term...
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  • 7

    Quadriga

    Quadruple Network Management System

    Quadriga is a web-application that acts as a clearing-house for text annotations -- in the form of contextualized triples, or “quadruples,” that form complex graphs -- generated with the Vogon desktop application (https://sourceforge.net/projects/gobtan/), and as an environment for managing text-annotation projects. It relies on a central authentication system for user authentication, a dictionary service (Wordpower) and an authority file service (Conceptpower). Quadriga can connect to a...
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  • 8
    PHDL

    PHDL

    An HDL alternative to PCB graphical schematic capture tools.

    PHDL is an HDL that functions as an alternative to mainstream graphical schematic capture tools. The language is compiled into a pcb netlist which can then be imported into a layout tool. We are currently on version 2.1 of the tool. We have created an eclipse plugin version of the tool as well as a standalone command-line based version. Both function identically and output a netlist that can be imported into a pcb layout tool. VHDL revolutionized how FPGA designs and digital logic...
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  • 9

    Factory Equipment Network Testing

    Measurement science-based performance & conformance testing framework

    Real-time production information is needed to optimize manufacturing activities in a factory, but acquiring this information from isolated proprietary equipment is a manual process that takes time and introduces errors. Connecting equipment to the factory network can make accurate production information immediately available, but widespread interconnection of equipment has been inhibited by the lack of common information models and methods to measure performance and conformance. This project...
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    Smart Business Texting that Generates Pipeline

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  • 10
    famos

    famos

    Framework for Agent-oriented MOdelling and Simulation

    Famos is a Java-based framework for developing agent-based models. It uses the discrete-event simulation framework Desmo-J (http://desmoj.sourceforge.net) as its simulation engine. Famos implements event-driven time advance and focusses on supporting an explicit model of space for the environment, including the movement of agents. Famos was developed in the context of a PhD project. Many aspects of its implementation are therefore still in the prototype stage. It does come with two...
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  • 11

    Java VCO Simulator

    VCO Simulator written in Java.

    This project is a demonstration of a Voltage Controlled Oscillator that is written in Java.
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  • 12

    JCycles

    [frozen] A library for computing cycles in graphs or in Java code.

    [This project is frozen, but has an offspring with more features: https://github.com/jeffhain/jadecy ] JCycles provides treatments to compute cycles, or just strongly connected components, in directed graphs in general, or in classes or packages dependencies graphs parsed from class files (major version <= 51, else does best effort). It uses Tarjan's algorithm for SCCs, and Johnson's for cycles, with continuations instead of recursion, which allows to handle large graphs (<...
    Downloads: 1 This Week
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  • 13

    TriageTools

    Tools for partitioning and prioritizing fastq data

    TriageTools is a collection of tools for partitioning raw data (fastq reads) from high-throughput sequencing projects. The tools are designed for basic data management as well for prioritizing analysis of certain subsets. The project wiki contains usage information.
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  • 14
    HLM is a proof assistant for everyday mathematics, which is currently being developed. It aims for a user experience as close as possible to regular mathematical practice, and proofs which are understandable by humans with little extra effort.
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  • 15
    Navigate
    An integrated set of functions that automate many navigational and tidal calculations which can be time consuming and error prone if performed manually. It can be linked to a GPS to automatically receive position fixes and other information.
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  • 16

    Saferwater

    Helping to improve drinking water safety where there isn't much.

    This program helps the user risk assess the raw water quality, aids in determining optimum clarification and filtration, aids in developing an understanding of the disinfection process, and puts it together in an easy to follow HACCP plan, which identifies the critical barriers, monitoring and limits that should be applied to ensure a reduction in the raw water risk profile. The mitigated or residual risk profile is also given (i.e. assuming HACCP plan implementation)
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  • 17
    FALCON - Text Search Java Project

    FALCON - Text Search Java Project

    JSON based text search Java Project

    ----------------- - What is it? - ----------------- The "Falcon Search" is a JAVA API and tool to search inside the documents. It was originally started to search the content in pdf files under the project "HAWK Search". Searching with this tool is query-based not word-based as in most of the document search tools OR document readers. It also takes care of jumbling of words within query and spelling mistakes. Commonly used techniques in this project are Natural Language...
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  • 18
    Temperature converter 4 java

    Temperature converter 4 java

    A java program to convert temperatures

    This program has an educational purpose only. It demonstrates a very simple application to convert temperatures between Celsius, Kelvin and Fahrenheit scales
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  • 19
    JinnIde is a plugin that allows using Jinni Prolog, now also hosted here on this site (with open source license!), within the confines of an IDE integrated in JEdit.
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  • 20

    RoboStopwatch

    Automation scheduler and monitor with stopwatch GUI widget.

    This program schedules, launches and monitors any Java Runnable object. Anything you can do from Java, you can schedule and monitor using this program. It includes a nifty stopwatch widget as a metaphor for measuring performance. The monitoring is done via event messages which are displayed in real time in a GUI dialog and stored in a JavaDB database. Any number of tasks (Runnables) can be launched and monitored simultaneously. The user / programmer of the API Jar designs their own...
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  • 21
    cy2fluxviz

    cy2fluxviz

    cy2fluxviz : Cytoscape 2 plugin for flux distribution visualization

    cy2fluxviz - Cytoscape 2 Plugin for the visualization of flux distributions in networks. Latest releases from https://github.com/matthiaskoenig/cy2fluxviz
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  • 22

    cmotif

    A method for mining conditional phosphorylation motifs

    Phosphorylation motifs represent position-specific amino acid patterns around the phosphorylation sites in the set of phosphopeptides. The discovery of phosphorylation motifs is a very valuable work in bioinformatics. Although several algorithms have been proposed to uncover phosphorylation motifs, the problem of efficiently discovering a set of significant motifs with sufficiently high coverage and non-redundancy still remains unsolved. In this paper, we propose an algorithm called C-Motif...
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  • 23

    Computing with units

    Calculator that takes care of measurement units.

    Java program for computations with values expressed in terms of physical or other units. Supports complicated mathematical expressions and user-defined functions. Invoked from scripts, line command, or as GUI. Extensive units data base.
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  • 24
    ActiveFolder

    ActiveFolder

    ActiveFolder can be integrated with existed scientific computation.

    Welcome to the ActiveFolder project, the open source for management simulataion data and reproducing. ActiveFolder provide data reproduction for comparative study and searching reproduction data, by storing data coupled with provenance information. ActiveFolder is integrated existed grid computing service and cloud services. And also, ActiveFolder can be integrated with existed scientific computation, analysis and visualization software without modification.
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  • 25

    NIKS

    NIKS (Needle in a K-stack) - detection of mutations in NGS data

    To get access to the code, please check it out with svn as described in the code section.
    Downloads: 0 This Week
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