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JAligner is an open source Java implementation of the dynamic programming algorithm Smith-Waterman with Gotoh's improvement for biological local pairwise sequence alignment with the affine gap penalty model.
EM Demonstration is a little tool for Physics teachers and students that helps model electric fields in flux lines as well as draw equipotential regions. Simply put, it is a classroom demonstration/modeler. Please help support us and donate.
Mobile Robotics is a java project developing wireless communication using bluetooth between a hand-held (palm, cellular phone) to a Lego Mindstorm device. We intend to bypass the limitations of the IR tower creating a truly wireless mindstorm.
Maui Scheduler is an advanced reservation HPC parallel batch scheduler for use with Linux and BSD clusters. Maui provides a complete scientific scheduling solution, supporting running custom parallel and MPI jobs over Myrinet and ethernet.
DIET Agents is a lightweight, scalable and robust multi-agent platform in Java. It is especially suitable for rapidly developing P2P prototype applications and/or adaptive, distributed applications that use bottom-up, nature-inspired techniques.
OpenL implements Java-like languages allowing to use code snippets placed in Excel, XML, or DB. OpenL is a foundation for OpenRules http://openrules.com. Maintained from http://openl.org
This is the Sokofinity project. The goal of this project is to recreate the classic NES game DuckHunt, only this time in 3D with Virtual Reality. Using an Infinity Box and Flock Of Birds positioning sensors, the game gets a new dimension.
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Kandid generates images using genetic algorithms. In a simulated evolution surprising images can be found calculated with Lisp expressions, Textures, Iterated Function Systems, Linear Cellular Automata, Voroni diagrams, Lindenmayer Systems and POVray
GATA is a graphic alignment tool for comparative sequence analysis. It makes use of BLAST to graphically align two DNA sequences, creating box- line- box representations of window scored local alignments. GATA also displays extensive GFF gene annotation.
i-Tor is a set of Tools and Technologies for Open Repositories, based on Linux, Java, MySQL, Mirage and other free components. It harvests OAI and turns databases into Open Archives. It includes similarity, backlinks and related search based on Lucene.
Sight provides a friendly interface to create and connect agents for bioinformatics. The workflow supports multiple responses to a single request, structure transforms, filters and request history access.Can talk with ordinary http servers (get and post)
BioEra is DSP visual designer that can be used to create interfaces between human being and a machine with using bio signals like EEG, QEEG, HEG, EMG, ECG, GSR, EOG, visual/sound entrainment and others.
JBOMB - Java Bill Of Materials Builder is an open source program which allows for the specification and design of how components within a physical machine will fit together to function as a whole. It has detailed tree view and HTML list output functions.
Sciense Searcher is a system that lets you search, organize and share bibliographic cites of research articles, books, booklets, collections, manuals, thesis, proceedings, technical reports, unpublished publications and misc.
Ganzúa is a cryptanalysis tool for classical ciphers (mono and polyalphabetic) that lets the user define almost completely arbitrary cipher and plain alphabets, allowing for the proper cryptanalysis of cryptograms obtained from non-English texts.
Set of Java packages to apply Genetic Algorithms to any kind of problem. Various genetic operators are implemented and an example shows of how the system could be applied to digital circuit evolution.
TeleMedMail allows doctors to send secure clinical cases via email, alleviating the shortage of specialists in remote areas. TMM can send cases directly to a specialist, or to a server that stores cases in a SQL database with secure web access.
InfixCalc is a scientific calculator for Java-Phones. The calculator uses an infix notation, which makes handling quite easy. Accuracy 10-18 digits. Functions: y^x,log,!,nCr,sin,cos,tan,asin,...
IslandEv distributes a Genetic Algorithm (like <a href="/projects/jaga">JaGa</a>) across a network (see <a href="/projects/distrit">DistrIT</a>) using an island based coevolutionary model in which neighbouring islands swap migrating individuals every
A plugin for the Eclipse IDE implementing NumericalChameleon: a powerful numerical convertor, supporting more than 2300 units in 78 categories (physics, radixes, exchange rates, unicode, etc). Fully integrated in the Eclipse IDE (refactoring, copy/paste)