Showing 2923 open source projects for "java class"

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  • 1
    JGAP is a Genetic Algorithms and Genetic Programming package written in Java. It is designed to require minimum effort to use, but is also designed to be highly modular. JGAP features grid functionality and a lot of examples. Many unit tests included. Legal notice/Impressum: Klaus Meffert An der Struth 25 D-65510 Idstein sourceforge <at> klausmeffert.de
    Downloads: 10 This Week
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  • 2
    merlin-sysbio
    merlin is an user-friendly Java application that performs the reconstruction of genome-scale metabolic models for any organism that has its genome sequenced. It performs several steps of the reconstruction process, including the functional genomic annotations of the whole genome. Moreover, merlin includes tools for the identification and annotation of transport proteins encoding genes, as well as the generation of transport reactions for such carriers. Also, merlin includes tools for the...
    Downloads: 0 This Week
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  • 3

    eyeCure

    eyeCure helps you cure your ill eyes, tired or intermittent exotropia.

    eyeCure helps you cure your tired eyes or intermittent exotropia (exodeviation) by forcing you take rest regularly, if you don't feel good in eyes, or even have headache for too much computer usage. eyeCure did help me feel much better. Hope it helps you too.
    Downloads: 0 This Week
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  • 4
    Microscopy Image Processing Package
    XMIPP is an image processing suite for 3D-reconstruction of biological specimens from transmission electron microscopy data. NOTE that stable releases (including binaries) are longer stored at Sourceforge, but are available at http://xmipp.cnb.csic.es
    Downloads: 5 This Week
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  • 5
    Krowdix
    Krowface (Krowdix 3.0) is a simulation and implementation tool of social networks. To visualize and analyze the evolution of different social networks in real time. And the creation of a social network, configuring the parameters that define it. All this through a simple web interface and user friendly.
    Downloads: 0 This Week
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  • 6
    Lompad

    Lompad

    Metatagging Editor for Learning Object Metadata (IEEE's LOM)

    Lompad is a metatagging tool for learning object. It supports the IEEE-lom spec and SCORM, CANCORE and Normetic profiles. The interface is available in French, English and Spanish Consult the project's Web Site for more information.
    Downloads: 0 This Week
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  • 7

    xorlisp

    Bit level lambda continuations and nothing else - Queue automata

    Not working yet. To deal with the Halting Problem, computing and data are navigated using debugger ops: linearForward and treeForward, which navigate an astronomically large bit string where 1 is ( and 0 is ). All pairs are derived from (). For example, true is represented as ((()())()), and false is (()(()())). It appears related to the church encoding of lambda where T chooses first parameter and F chooses second, of a pair. Continuations are nearly finished code and are represented as a...
    Downloads: 0 This Week
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  • 8
    MD PnP | OpenICE

    MD PnP | OpenICE

    Open Source Integrated Clinical Environment

    As of 2015-06-23, this project may now be found at http://www.github.com/mdpnp/mdpnp. A prototype reference implementation of the standard for the Integrated Clinical Environment (ASTM F2761-2009)
    Downloads: 0 This Week
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  • 9

    DbOutputter4RS

    Plugin for Repast Simphony that supports storage of results in a DB

    Insalling the plugin it is possible to direct data collected by data gatherers into a MySQL database. The database connection is configured via a wizzard. The whole process is similar to putting data to a file.
    Downloads: 0 This Week
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  • 10
    SEWOL: Security-oriented Workflow Lib

    SEWOL: Security-oriented Workflow Lib

    Java Library for workflow handling

    SEWOL provides support for the handling of workflow traces. It allows to specify the shape and content of process traces in terms of entries representing the execution of a specific workflow activity. Currently it supports plain text, Petrify, MXML and XES log file types. In order to specify security-related context information, SEWOL provides access control models such as access control lists (ACL) and role-based access control models (RBAC). SEWOL uses and encloses the following...
    Downloads: 0 This Week
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  • 11
    SEPIA: Security-oriented PN Framework

    SEPIA: Security-oriented PN Framework

    Petri net framework for security related modeling and reasoning.

    SEPIA provides implementations for various types of Petri nets. Along Place/Transition-nets, it supports Petri nets with distinguishable token colors and defines coloured workflow nets, where coloured tokens are interpreted as data elements used during process execution. To support information flow analysis of processes, SEPIA defines so-called IF-Nets, tailored for security-oriented workflow modeling which enable users to assign security-levels (HIGH, LOW) to transitions, data elements and...
    Downloads: 0 This Week
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  • 12
    XMLPipeDB is a suite of tools for building relational databases from XML sources with minimal manual processing of the data. While the applicability is general, our motivation was to facilitate the management of biological data from different sources.
    Downloads: 2 This Week
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  • 13

    Protein Contact Matrix Generator

    Command line application to generate contact matrix from proteins (3D)

    A protein contact matrix is 2D representation of the distances between amino acid residues in a 3D protein structure. Protein Contact Map Generator (PCMGen) is a command line tool which takes protein 3D structures (PDB format files) as input and computes contact distances between two chains (from single or two different proteins). These matrix files can be further visualised as Contact Maps using other visualization tools/ programs (like R-heatmaps). Contact Maps can be used to understand...
    Downloads: 0 This Week
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  • 14
    zet-evacuation
    Moved to GitHub. This is the old, unmaintained source code. https://github.com/zet-evacuation A tool to model and simulate evacuation situations in buildings using flows on graphs and cellular automatons. It allows visualization of both models in OpenGL.
    Downloads: 0 This Week
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  • 15
    Open Information Integration
    Open Information Integration Tool Suite (Open II) is used by analysts and programmers to accelerate data integration and harmonization across organizations. OpenII has a neutral schema repository for browsing and comparing all sorts of data models. OpenII is built as a Rich Client Platform Application on top of Eclipse 3.x. Developers need to download Eclipse, install the RCP support, the Fatjar plugin and the Delta Pack in one of the 3.x flavors. Release Notes Release Date: Jan...
    Downloads: 14 This Week
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  • 16
    JPOP is a pure java parallel optimization package based on the Optimization Java Package. It supports analytical gradients and Hessians for non-linear optimization. JPOP is based on uncmin in Fortran but employs java arrays and object oriented code.
    Downloads: 0 This Week
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  • 17
    Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools. The file formats currently supported are BAM, SAM, FASTQ, FASTA, QSEQ, BCF, and VCF. For a longer high-level description of Hadoop-BAM, refer to the article "Hadoop-BAM: directly manipulating next generation sequencing data in the cloud" in Bioinformatics Volume 28 Issue 6 pp. 876-877,...
    Downloads: 0 This Week
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  • 18
    SBSI
    SBSI (Systems Biology Software Infrastructure) is a suite of tools for systems biology, such as parallelized numerical algorithms, and a Java, Eclipse RCP based client for visualizing results, running simulations, and integrating SBML based plugins.
    Downloads: 1 This Week
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  • 19
    SoftSmithy is a platform for open source Java developers. The core is an extended Java utility library. In the future there may be open source software build on this library.
    Downloads: 0 This Week
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  • 20
    This is software for display geographical maps, written on C++. It's small and simple library, which allow to use it on PDA (like Palm and Windows Mobile) and desktop.
    Downloads: 0 This Week
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  • 21

    UNSW Metadata Stores (ResData)

    An institutional research metadata management repository.

    ResData is an institutional metadata repository to facilitate effective management, discovery and sharing of institutional research data collections. It integrates with institutional enterprise systems, such as HR and Grant management systems to facilitate re-use of existing information, such as People and Project records. ResData has been developed by the Library Repository Services, University of New South Wales. The work was supported by the Australian National Data Service (ANDS)...
    Downloads: 0 This Week
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  • 22
    SterHemel

    SterHemel

    Volg de gebeurtenissen aan de sterrenhemel op je mobiel

    De gebeurtenissen aan de sterrenhemel in Nederland en België op je mobiel! SterHemel toont in een handomdraai wat er aan de sterrenhemel te zien is met het blote oog, een verrekijker of een kleine telescoop. De app is bedoeld voor waarnemers in Nederland en België en is daarom in het Nederlands/Vlaams gemaakt. De app toont de gebeurtenissen aan de sterrenhemel onder andere in de vorm van een astrokalender, de tab "Vannacht aan de hemel" met inforatie over Zon, Maan planeten en...
    Downloads: 0 This Week
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  • 23

    NexusDataLink

    Connect, monitor and control your (embedded) systems remotely. m2m/IoT

    Connect, monitor and control your systems or embedded devices remotely (m2m/IoT) - for example your Raspberry Pi. The communication interface is defined in XML automatically providing a REST interface. NexusDataLink integrates smoothly in existing software or firmware and significantly reduces connection- or communication-related source code.
    Downloads: 0 This Week
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  • 24
    Beam Strength Predictor

    Beam Strength Predictor

    Predicts Moment Capacity of Beams

    Requires Java Runtime Environment (JRE). You can download it at: http://www.oracle.com/technetwork/java/javase/downloads/index.html
    Downloads: 0 This Week
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  • 25
    Downloads: 0 This Week
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